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| {| class="wikitable" | | {| class="wikitable" |
| ! Component | | ! Component |
− | ! Title | + | ! Title, Description |
− | ! Desription
| + | |
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− | ! rowspan="3" | [[Apollo]] | + | ! [[Apollo]] |
− | | '''[[Apollo Tutorial]]''' | + | | {{:Apollo/tool_data | template = TutorialLinks }} |
− | | The Apollo session from the [[2010 GMOD Summer School - Americas]].
| + | |
− | |-
| + | |
− | | '''[http://apollo.berkeleybop.org/current/userguide.html Apollo Userguide]'''
| + | |
− | | A comprehensive guide to installing and using Apollo.
| + | |
− | |-
| + | |
− | | '''[http://www.dynamicgene.org Apollo tutorials at the Dynamic Gene web site]'''
| + | |
− | | Flash based tutorials on how to use Apollo, using rice as an example. Sections of particular interest are [http://www.dynamicgene.org/annotation/annotation.html Annotation] - how to use Apollo, and [http://www.dynamicgene.org/resources/resources.html Resources] - how to download sample data and install Apollo on an MS Windows system. | + | |
| |- | | |- |
| ! [[BioMart]] | | ! [[BioMart]] |
− | | '''[[BioMart Tutorial]]''' | + | | |
− | | Based on the BioMart workshop at the [[October 2011 GMOD Meeting]].
| + | ; [[BioMart Tutorial]] |
| + | : Based on the BioMart workshop at the [[October 2011 GMOD Meeting]]. |
| |- | | |- |
− | ! rowspan="2" | [[Chado]] | + | ! [[Chado]] |
− | | '''[[Chado Tutorial]]''' | + | | |
− | | Based on the Chado session from the [[2010 GMOD Summer School - Americas]].
| + | ; [[Chado Tutorial]] |
| + | : Based on the Chado session from the [[2013 GMOD Summer School]]. |
| + | ; [[Artemis-Chado Integration Tutorial]] |
| + | : Based on the session of the same title from the [[2009 GMOD Summer School - Europe]]. |
| |- | | |- |
− | | '''[[Artemis-Chado Integration Tutorial]]'''
| + | ! [[Cloud|GMOD in the Cloud]] |
− | | Based on the session of the same title from the [[2009 GMOD Summer School - Europe]]. | + | | |
| + | ; [[AWS walkthrough]] |
| + | : A gentle introduction to getting a machine up and running on the Amazon Cloud |
| |- | | |- |
| ! [[CMap]] | | ! [[CMap]] |
− | | '''[http://www.gramene.org/tutorials/cmap.html Gramene CMap User Tutorial]''' | + | | {{:CMap/tool_data | template = TutorialLinks }} |
− | | Available in both [http://www.gramene.org/tutorials/cmap_tutorial.pdf PDF] and [http://www.gramene.org/tutorials/cmap_tutorial.ppt PowerPoint] formats. This explains how to use CMap in the context of Gramene. | + | |
| |- | | |- |
− | ! rowspan="3" | [[Galaxy]] | + | ! [[Galaxy]] |
− | | '''[[Galaxy Tutorial]]''' | + | | {{:Galaxy/tool_data | template = TutorialLinks }} |
− | | Galaxy server administration tutorial. Based on [[Galaxy]] session from the [[2010 GMOD Summer School - Americas]] | + | |
| |- | | |- |
− | | '''[http://www.openhelix.com/cgi/tutorialInfo.cgi?id=82 Galaxy User Tutorial]'''
| + | ! [[GBrowse]] |
− | | A Flash based tutorial on using Galaxy. Provided by [http://www.openhelix.com OpenHelix]. Tutorial includes slides, handouts and exercises. | + | | {{:GBrowse/tool_data | template = TutorialLinks }} |
| |- | | |- |
− | | '''[http://main.g2.bx.psu.edu/screencast Galaxy Screencasts]'''
| + | ! [[GBrowse_syn]] |
− | | Short screencasts showing how to do many common tasks using [[Galaxy]]. | + | | {{:GBrowse_syn/tool_data | template = TutorialLinks }} |
| |- | | |- |
− | ! rowspan="4" | [[GBrowse]] | + | ! [[GFF3]] |
− | | '''[http://www.openhelix.com/gbrowse GBrowse User Tutorial]''' | + | | |
− | | A Flash based tutorial on using GBrowse. Provided by [http://www.openhelix.com OpenHelix]. Tutorial includes slides, handouts and exercises.
| + | ; [[GFF3]] |
| + | : Introduction to and documentation of the GFF3 format |
| |- | | |- |
− | | '''{{GBrowseAdminTutorialLink|GBrowse Administration Tutorial}}'''
| + | ! [[JBrowse]] |
− | | Detailed explanation of how to install and configure [[GBrowse]]. An administration tutorial is also available for {{GBrowse1AdminTutorialLink|GBrowse 1.x}}
| + | | {{:JBrowse/tool_data | template = TutorialLinks }} |
| |- | | |- |
− | | '''[[GBrowse NGS Tutorial]]'''
| + | ! [[MAKER]] |
− | | Instructions on how to visualize [[next generation sequencing]] data in GBrowse using [http://samtools.sourceforge.net SAMtools]. The tutorial includes a starting [[VMware]] image, and uses the example data that comes with SAMtools. | + | | {{:MAKER/tool_data | template = TutorialLinks }} |
| |- | | |- |
− | | '''[[GBrowse Tutorial]]'''
| + | ! [[Pathway Tools]] |
− | | Based on the GBrowse session from the [[2010 GMOD Summer School - Americas]]. This relies heavily on the {{GBrowseAdminTutorialLink| GBrowse Administration Tutorial}}. | + | | {{:Pathway Tools/tool_data | template = TutorialLinks }} |
| |- | | |- |
− | ! [[GBrowse_syn]] | + | ! [[SOBA]] |
− | | '''[[GBrowse_syn Tutorial]]''' | + | | {{:SOBA/tool_data | template = TutorialLinks }} |
− | | Based on the GBrowse_syn session from the [[2010 GMOD Summer School - Americas]]. | + | |
− | |-
| + | |
− | ! [[JBrowse]]
| + | |
− | | '''[[JBrowse Tutorial]]'''
| + | |
− | | Based on the JBrowse session from the [[2010 GMOD Summer School - Americas]].
| + | |
− | |-
| + | |
− | ! [[MAKER]]
| + | |
− | | '''[[MAKER Tutorial]]'''
| + | |
− | | Based on the MAKER session from the [[2010 GMOD Summer School - Americas]].
| + | |
| |- | | |- |
| ! [[Tripal]] | | ! [[Tripal]] |
− | | '''[[Tripal Tutorial]]''' | + | | {{:Tripal/tool_data | template = TutorialLinks }} |
− | | Based on the Tripal session from the [[2010 GMOD Summer School - Americas]]. | + | |
| |- | | |- |
| + | ! [[WebApollo]] |
| + | | {{:WebApollo/tool_data | template = TutorialLinks }} |
| |} | | |} |