Category:Tutorials

This lists all online GMOD tutorials. See Training and Outreach for other types of GMOD-related training.

Component	Title, Description
Apollo	Apollo Tutorial 2011 The Apollo session from the 2011 GMOD Spring Training Apollo Tutorial 2010 The Apollo session from the 2010 GMOD Summer School - Americas. Apollo tutorials at the Dynamic Gene web site. Flash based tutorials on how to use Apollo, using rice as an example. Sections of particular interest are Annotation - how to use Apollo Resources - how to download sample data and install Apollo on an MS Windows system. Apollo user guide The current user guide, which has comprehensive instructions for installation and usage of Apollo.
BioMart	BioMart Tutorial Based on the BioMart workshop at the October 2011 GMOD Meeting.
Chado	Chado Tutorial Based on the Chado session from the 2012 GMOD Summer School. Artemis-Chado Integration Tutorial Based on the session of the same title from the 2009 GMOD Summer School - Europe.
CMap	Tutorial @ Gramene
Galaxy	Galaxy Tutorial How to install Galaxy. Based on Galaxy session from the 2012 GMOD Summer School Galaxy 101 An introduction to using Galaxy. Galaxy Screencasts Short screencasts showing how to do many common tasks using Galaxy. Community Tutorials List List of online tutorials written by the Galaxy Community. RNA-Seq Example An introduction to NGS processing (specifically RNA-Seq) with Galaxy. OpenHelix Galaxy User Tutorial A Flash based tutorial on using Galaxy. Provided by OpenHelix. Tutorial includes slides, handouts and exercises. Requires subscription.
GBrowse	GBrowse User Tutorial A Flash based tutorial on using GBrowse. Provided by OpenHelix. Tutorial includes slides, handouts and exercises. GBrowse2 Admin Tutorial Detailed explanation of how to install and configure GBrowse. An administration tutorial is also available for GBrowse 1.x GBrowse NGS Tutorial Instructions on how to visualize next generation sequencing data in GBrowse using SAMtools. The tutorial includes a starting VMware image, and uses the example data that comes with SAMtools. GBrowse Tutorial Based on the GBrowse session from the 2012 GMOD Summer School. This relies heavily on the GBrowse2 Admin Tutorial.
GBrowse_syn	GBrowse_syn Tutorial Based on the GBrowse_syn session from the 2012 GMOD Summer School.
JBrowse	Getting Started with JBrowse Tutorial part of the JBrowse documentation
MAKER	MAKER Tutorial 2012 taught as part of the 2012 GMOD Summer School
Pathway Tools	Pathway Tools slides General information about Pathway Tools, including slides from tutorials and user guides Upcoming Events Pathway Tools tutorials and workshops
SOBA	SOBA Tutorial taught as part of the 2012 GMOD Summer School
Tripal	Tripal Tutorial (v1.0) from the 2012 GMOD Summer School Tripal Tutorial (v0.3.1b) The full v0.3.1b tutorial Tripal Tutorial (v0.3.1b VM) for use with the Tripal virtual machine Tripal Tutorial (pre version 0.3b) from the 2010 GMOD Spring School
WebApollo	WebApollo Tutorial 2012 taught as part of the 2012 GMOD Summer School; uses a prerelease version of WebApollo

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