Difference between revisions of "2012 GMOD Summer School"
From GMOD
m (→Course Work: correcting link) |
m (→The Course: course table edits) |
||
| Line 10: | Line 10: | ||
==The Course== | ==The Course== | ||
| − | A 5 day hands-on course on GMOD component installation, configuration, and usage. | + | A 5 day hands-on course on GMOD component installation, configuration, and usage. Most sessions were four hours (a half day), and the evenings featured work sessions where the instructors for that day's topics were available to answer questions and help participants use the tools with their data. The instructors on the course were experienced component developers and GMOD project staff. |
| − | + | The course covered the following topics in detail: | |
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
{| class="wikitable" | {| class="wikitable" | ||
| + | ! Topic | ||
| + | ! Tutorial | ||
! Instructor | ! Instructor | ||
| − | ! GMOD | + | ! Affiliation; GMOD role |
| − | + | ||
|- | |- | ||
| − | | [[User:Scott|Scott Cain]] | + | | Amazon Web Services set up || soon! || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] |
| − | | | + | |
| − | | [http://oicr.on.ca/ Ontario Institute for Cancer Research] | + | |
|- | |- | ||
| − | | [[ | + | | [[Chado]] || [[Chado Tutorial 2012|Tutorial]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] |
| − | | [[ | + | |
| − | | [http:// | + | |
|- | |- | ||
| − | | [[ | + | | [[Galaxy]] || [[Galaxy Tutorial 2012|Tutorial]] || [[User:Clements|Dave Clements]] || [http://galaxyproject.org/ Galaxy Project], [http://emory.edu/ Emory University]<br>[[Galaxy]] |
| − | | [[ | + | |
| − | | [http:// | + | |
|- | |- | ||
| − | | [[ | + | | [[GBrowse]] || [[GBrowse Tutorial 2012|Tutorial]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] |
| − | | [[ | + | |
| − | | [http:// | + | |
|- | |- | ||
| − | | [[ | + | | [[GBrowse syn]] || [[GBrowse_syn Tutorial 2012|Tutorial]] || [[User:Mckays|Sheldon McKay]] || [http://iplantcollaborative.org iPlant Collaborative], [http://www.cshl.edu CSHL]<br>[[GBrowse_syn]], [[GBrowse]] |
| − | | [[ | + | |
| − | | [http:// | + | |
|- | |- | ||
| − | | [[ | + | | [[GFF3]] || [[GFF Tutorial 2012|Tutorial]] || [[User:Scott|Scott Cain]] || [http://oicr.on.ca/ Ontario Institute for Cancer Research]<br>GMOD Project Coordinator; [[Chado]], [[GBrowse]] |
| − | | [[ | + | |
| − | | [http:// | + | |
|- | |- | ||
| − | | [[User:RBuels|Robert Buels]] | + | | [[JBrowse]] || [[JBrowse Tutorial 2012|Tutorial]] || [[User:RBuels|Robert Buels]] || [http://berkeley.edu University of California, Berkeley]<br>[[JBrowse]] |
| − | | | + | |
| − | | [http://berkeley.edu University of California, Berkeley] | + | |
|- | |- | ||
| − | | [[User: | + | | [[MAKER]] || [[MAKER Tutorial 2012|Tutorial]] || [[User:Bmoore|Barry Moore]] || [http://utah.edu University of Utah]<br>[[MAKER]] |
| − | | [[MAKER]] | + | |- |
| − | | [http://utah.edu University of Utah] | + | | [[SOBA]] || [[SOBA Tutorial 2012|Tutorial]] || [[User:Bmoore|Barry Moore]] || [http://www.utah.edu University of Utah]<br>[[MAKER]] |
| + | |- | ||
| + | | [[Tripal]] || [[Tripal Tutorial (v1.0)|Tutorial]] || [[User:sficklin|Stephen Ficklin]] || [http://www.wsu.edu Washington State University]<br>[[Tripal]] | ||
| + | |- | ||
| + | | [[WebApollo]] || [[WebApollo Tutorial 2012|Tutorial]] || [[User:Elee|Ed Lee]] || [http://www.berkeleybop.org/ Berkeley Bioinformatics Open-source Projects (BBOP)]<br>[[Apollo]], [[WebApollo]] | ||
|} | |} | ||
| − | |||
==Course Work== | ==Course Work== | ||
Revision as of 21:07, 11 September 2012
The GMOD Summer School is a five day course that covers the use of several widely used GMOD components in the context of a organism or clade database. The course is taught by members of the projects' development teams. Applications are competitive, since we generally receive many more applications that we have slots.
GMOD 2012 Summer School wiki (contents available to course participants only)
The Course
A 5 day hands-on course on GMOD component installation, configuration, and usage. Most sessions were four hours (a half day), and the evenings featured work sessions where the instructors for that day's topics were available to answer questions and help participants use the tools with their data. The instructors on the course were experienced component developers and GMOD project staff.
The course covered the following topics in detail:
| Topic | Tutorial | Instructor | Affiliation; GMOD role |
|---|---|---|---|
| Amazon Web Services set up | soon! | Scott Cain | Ontario Institute for Cancer Research GMOD Project Coordinator; Chado, GBrowse |
| Chado | Tutorial | Scott Cain | Ontario Institute for Cancer Research GMOD Project Coordinator; Chado, GBrowse |
| Galaxy | Tutorial | Dave Clements | Galaxy Project, Emory University Galaxy |
| GBrowse | Tutorial | Scott Cain | Ontario Institute for Cancer Research GMOD Project Coordinator; Chado, GBrowse |
| GBrowse syn | Tutorial | Sheldon McKay | iPlant Collaborative, CSHL GBrowse_syn, GBrowse |
| GFF3 | Tutorial | Scott Cain | Ontario Institute for Cancer Research GMOD Project Coordinator; Chado, GBrowse |
| JBrowse | Tutorial | Robert Buels | University of California, Berkeley JBrowse |
| MAKER | Tutorial | Barry Moore | University of Utah MAKER |
| SOBA | Tutorial | Barry Moore | University of Utah MAKER |
| Tripal | Tutorial | Stephen Ficklin | Washington State University Tripal |
| WebApollo | Tutorial | Ed Lee | Berkeley Bioinformatics Open-source Projects (BBOP) Apollo, WebApollo |
Course Work
The 2012 Summer School used Amazon Web Services to host virtual GMOD instances containing the software and demo data used during the course. See GMOD in the Cloud for more information on the GMOD Amazon Machine Images available to the public. The tutorials used on the course are available on this wiki for interested persons to work through.
