PAG 2010
From GMOD
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GMOD will once again have a strong presence at the Plant and Animal Genome Conference (PAG 2010). There will be many workshops, computer demos, and posters, either about GMOD and GMOD Components, or using GMOD components. This page will list items as they are listed on the PAG website. |
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If you are attending PAG please consider also attending the January 2010 GMOD Meeting which will be held in San Diego immediately after PAG. |
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About GMOD Components
| Day | Track | Time | Title & Presenter | Components |
|---|---|---|---|---|
| Saturday Jan 9 |
Computer & Training Workshop | 1:30-2:30 | Animal Genomics with Galaxy: Analyze, Publish, and Visualize, Anton Nekrutenko | Galaxy |
| 3:50-6:00 | MAKER: An easy to use genome annotation pipeline, Carson Holt | MAKER | ||
| Sunday Jan 10 |
Computer & Training Workshop | 1:15-3:25 | The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse, Scott Cain | GBrowse |
| Monday Jan 11 |
Computer & Training Workshop | 12:50-1:10 | GMOD Project Update, Dave Clements | GMOD Components |
| 1:10-1:30 | Using the JBrowse Genome Browser with Large Amounts of Data, Mitch Skinner | JBrowse | ||
| Tuesday Jan 12 |
Computer & Training Workshop | 3:50-6:00 | Using Gramene: A Genomics and Genetics Resource for Rice and other Grasses, Immanuel Yap | CMap |
| Wednesday Jan 13 |
Computer & Training Workshop | 10:20-12:30 | Comparative Genomics with GBrowse_syn: Visualizing your comparative genomics data with the Generic Synteny Browser, Sheldon McKay | GBrowse_syn |
| 2:30-2:50 | Tripal: a Construction Toolkit for Online Genomic Databases, Stephen Ficklin | Tripal |
Projects Using GMOD Components
| Day | Track | Time | Title & Author | Components |
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| Sunday Jan 10 |
Workshop | 3:50-6:00 | TAIR Workshop, Eva Huala | GBrowse, GBrowse_syn |
| Computer Demo | 4:10-4:30 | MaizeGDB: Tools and Resources, Carson Andorf | CMap, GBrowse | |
| 4:30-4:50 | How to Use MetaCyc, a Reference Database for Metabolism, and SolCyc, a Collection of Pathway Databases for the Solanaceae, on the Web and Using Pathway Tools, Lukas Mueller | Pathway Tools | ||
| 4:50-5:10 | GDR in Drupal: Facilitating Community Building and Efficient Maintenance, Sook Jung | Chado, Tripal | ||
| 5:10-5:30 | The Soybean Genome Database (SoyGD) Genomic Interactome Viewer, David Lightfoot | GBrowse | ||
| 5:50-6:10 | Community Curation Software at the Sol Genomics Network (solgenomics.net), Lukas Mueller | Chado | ||
| Monday Jan 11 |
Computer Demo | 1:50-2:10 | TreeGenes: A Forest Tree Genome Database, Jill Wegrzyn | CMap |
Posters
All poster sessions are on Monday, January 11.
| Track | Time | Title & Author | Components |
|---|---|---|---|
| EVEN Numbered Poster Session Monday Jan 11 |
10:00-11:30 | The Bovine Genome Database,
Christopher P. Childers, Justin T. Reese, Jaideep P. Sundaram, Donald C. Vile, Darren E. Hagen, Anna K. Bennett, Christine G. Elsik |
Apollo, Chado, GBrowse |
| GBrowse And Next Generation Sequencing Data, Scott Cain, Dave Clements, Lincoln Stein, the GMOD Consortium | GBrowse | ||
| ODD Numbered Poster Session Monday Jan 11 |
3:00-4:30 | P859: Visualizing And Comparing Genomes, Ken Youens-Clark, Immanual V. Yap, Doreen Ware | CMap |
| P861: Comparative Genomics Tools In GMOD, Dave Clements, Sheldon McKay, Ken Youens-Clark, Ben Faga, Scott Cain | CMap, GBrowse_syn, Sybil, SynView, Apollo | ||
