Difference between revisions of "PAG 2010"
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! [http://www.intl-pag.org/18/abstracts/W26_PAGXVIII_192.html Database Resources at the EBI: Ensembl And Ensembl Genomes - Access To Genome-Scale Data Across The Taxonomic Space], Bert Overduin | ! [http://www.intl-pag.org/18/abstracts/W26_PAGXVIII_192.html Database Resources at the EBI: Ensembl And Ensembl Genomes - Access To Genome-Scale Data Across The Taxonomic Space], Bert Overduin | ||
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! [[Tripal]]: a Construction Toolkit for Online Genomic Databases, [[User:Sficklin|Stephen Ficklin]] | ! [[Tripal]]: a Construction Toolkit for Online Genomic Databases, [[User:Sficklin|Stephen Ficklin]] | ||
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Revision as of 18:20, 29 December 2009
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GMOD will once again have a strong presence at the Plant and Animal Genome Conference (PAG 2010). There will be many workshops, computer demos, and posters, either about GMOD and GMOD Components, or using GMOD components. This page will list items as they are listed on the PAG website. |
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If you are attending PAG please consider also attending the January 2010 GMOD Meeting which will be held in San Diego immediately after PAG. |
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About GMOD Components
Projects Using GMOD Components
| Day | Track | Time | Title & Author | Components |
|---|---|---|---|---|
| Saturday Jan 9 |
Workshop | 11:40-12:00 | Development Of Tools For The Analysis And Visualisation Of Second Generation Sequencing Data For Brassica Species, Chris Duran | CMap (CMap3D) |
| Sunday Jan 10 |
Workshop | 2:15-2:30 | ConiferGDB: Current Status And Future Direction, Chun Liang | CMap |
| 3:50-6:00 | TAIR Workshop, Eva Huala | GBrowse, GBrowse_syn | ||
| Computer Demo | 4:10-4:30 | MaizeGDB: Tools and Resources, Carson Andorf | CMap, GBrowse | |
| 4:30-4:50 | How to Use MetaCyc, a Reference Database for Metabolism, and SolCyc, a Collection of Pathway Databases for the Solanaceae, on the Web and Using Pathway Tools, Lukas Mueller | Pathway Tools | ||
| 4:50-5:10 | GDR in Drupal: Facilitating Community Building and Efficient Maintenance, Sook Jung | Chado, Tripal | ||
| 5:10-5:30 | The Soybean Genome Database (SoyGD) Genomic Interactome Viewer, David Lightfoot | GBrowse | ||
| 5:30-5:50 | PhaseolusGenes: A Genomics Information Management And Marker Discovery Toolkit For A Non-Model Organism, Dawei Lin | CMap, GBrowse | ||
| 5:50-6:10 | Community Curation Software at the Sol Genomics Network (solgenomics.net), Lukas Mueller | Chado | ||
| Monday Jan 11 |
Computer Demo | 1:50-2:10 | TreeGenes: A Forest Tree Genome Database, Jill Wegrzyn | CMap |
| Tuesday Jan 12 |
Workshop | 11:55-12:10 | Towards A Bioinformatics Platform For The Musa Research Community, Mathieu Rouard | CMap, GBrowse |
Posters
All poster sessions are on Monday, January 11. Titles of sessions that are about GMOD Components are shown in bold.
| Track | Time | Title & Author | Components |
|---|---|---|---|
| EVEN Numbered Poster Session Monday Jan 11 |
10:00-11:30 | P830: The Hymenoptera Genome Database, Monica C. Munoz-Torres, Justin T. Reese, Christopher P. Childers, Anna K. Bennet, Jaideep P. Sundaram, Donald C Vile, Christine G. Elsik | Apollo |
| P842: The Bovine Genome Database, Christopher P. Childers, Justin T. Reese, Jaideep P. Sundaram, Donald C. Vile, Darren E. Hagen, Anna K. Bennett, Christine G. Elsik | Apollo, Chado, GBrowse | ||
| P858: GBrowse And Next Generation Sequencing Data, Scott Cain, Dave Clements, Lincoln Stein, the GMOD Consortium | GBrowse | ||
| ODD Numbered Poster Session Monday Jan 11 |
3:00-4:30 | P295: Wheat Genomic Data In GnpIS The URGI Information System Michael Alaux, Daphné Verdelet, Aminah-Olivia Keliet, Erik Kimmel, Baptiste Brault, Nacer Mohellibi, Benoit Hilselberger, Sophie Durand, Isabelle Luyten, Sébastien Reboux, Delphine Steinbach | GBrowse |
| P599: Segmental Duplications In Pig Genome, Zhi-Qiang Du , Danielle M. Gorbach , Zhiliang Hu , Max F. Rothschild | BioMart | ||
| P859: Visualizing And Comparing Genomes, Ken Youens-Clark, Immanual V. Yap, Doreen Ware | CMap | ||
| P861: Comparative Genomics Tools In GMOD, Dave Clements, Sheldon McKay, Ken Youens-Clark, Ben Faga, Scott Cain | CMap, GBrowse_syn, Sybil, SynView, Apollo | ||
| P917: PhaseolusGenes: A Genomics Information Management And Marker Discovery Toolkit For A Non-Model Organism, Dawei Lin, Paul Gepts, Adam Schaal, Jose Boveda, JVG dos Santos, Joe Fass, Jim Kami, Nikhil Joshi, Monica Britton, Zhiwei Lu | CMap, GBrowse | ||
| P921: TreeGenes: A Forest Tree Genome Database, Jill L Wegrzyn, Ben Figueroa, Minyoung Choi, Elly Y Chen, David B Neale | CMap | ||
