Difference between revisions of "PAG 2009"
From GMOD
m (→Posters) |
m (Removing #icon) |
||
(34 intermediate revisions by 3 users not shown) | |||
Line 1: | Line 1: | ||
− | + | [[File:Paglogo.gif|link=http://www.intl-pag.org/|right|PAG 2009 Conference]] | |
+ | GMOD once again had a strong presence at the [http://www.intl-pag.org/ Plant and Animal Genome Conference (PAG 2009)]. PAG was also immediately before the [[January 2009 GMOD Meeting]] and many GMOD members attended both meetings. | ||
− | + | There were be many, many workshops, computer demos, and posters, either about or using [[GMOD Components]]. This page lists only those items that mentioned [[GMOD Components]] in their abstracts. | |
− | + | ||
− | There | + | |
== About GMOD Components == | == About GMOD Components == | ||
Line 17: | Line 16: | ||
! [http://www.intl-pag.org/17/17-ebi.html Database Resources at the EBI Workshop] | ! [http://www.intl-pag.org/17/17-ebi.html Database Resources at the EBI Workshop] | ||
! 8:10-9:15 | ! 8:10-9:15 | ||
− | | [http://www.intl-pag.org/17/abstracts/ | + | | [http://www.intl-pag.org/17/abstracts/W74_PAGXVII_495.html Genome Resources at the EBI: Ensembl and Ensembl Genomes], Bert Overduin, Ensembl Team, Ensembl Genomes Team |
| [[BioMart]] | | [[BioMart]] | ||
|- | |- | ||
! Computer & Training Workshop | ! Computer & Training Workshop | ||
! 1:15-3:25 | ! 1:15-3:25 | ||
− | | [ | + | | [[GBrowse PAG 2009 Workshop|The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse]], [[User:Scott|Scott Cain]] |
| [[GBrowse]] | | [[GBrowse]] | ||
|- | |- | ||
! rowspan="3" | Monday<br />Jan 12 | ! rowspan="3" | Monday<br />Jan 12 | ||
− | ! | + | ! EVEN Numbered Poster Session |
! 10:00-11:30 | ! 10:00-11:30 | ||
| [[#Posters|See below]] for a list of relevant posters. | | [[#Posters|See below]] for a list of relevant posters. | ||
Line 34: | Line 33: | ||
! 1:10-1:30 | ! 1:10-1:30 | ||
| [http://ecoliwiki.net/colipedia/index.php/Welcome_to_EcoliWiki EcoliWiki] and [http://gowiki.tamu.edu/wiki/index.php/Main_Page GONUTS]: Wiki-Based Systems for Community Annotation, [[User:JimHu|Jim Hu]], ''et al.'' | | [http://ecoliwiki.net/colipedia/index.php/Welcome_to_EcoliWiki EcoliWiki] and [http://gowiki.tamu.edu/wiki/index.php/Main_Page GONUTS]: Wiki-Based Systems for Community Annotation, [[User:JimHu|Jim Hu]], ''et al.'' | ||
− | | [[ | + | | [[TableEdit]] |
|- | |- | ||
− | ! | + | ! ODD Numbered Poster Session |
! | 3:00-4:30 | ! | 3:00-4:30 | ||
| [[#Posters|See below]] for a list of relevant posters. | | [[#Posters|See below]] for a list of relevant posters. | ||
Line 44: | Line 43: | ||
! Computer & Training Workshop | ! Computer & Training Workshop | ||
! 10:20-12:30 | ! 10:20-12:30 | ||
− | | [ | + | | [[GBrowse_syn PAG 2009 Workshop|Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your syntenic data with GBrowse_syn]], [[User:Mckays|Sheldon McKay]], [[User:Scott|Scott Cain]], and [[User:Clements|Dave Clements]] |
| [[GBrowse_syn]] | | [[GBrowse_syn]] | ||
|} | |} | ||
Line 57: | Line 56: | ||
! Components | ! Components | ||
|- | |- | ||
− | ! Saturday<br />Jan 10 | + | ! rowspan="2" | Saturday<br />Jan 10 |
+ | ! [http://www.intl-pag.org/17/17-brassicas.html Brassicas Workshop] | ||
+ | ! 11:20-11:40 | ||
+ | | [http://www.intl-pag.org/17/abstracts/W10_PAGXVII_077.html Annotation And Data Mining For The ''Brassica rapa'' Genome Sequencing Project], Martin Trick, ''et al.'' | ||
+ | | [[GBrowse]] | ||
+ | |- | ||
! [http://www.intl-pag.org/17/17-aqua.html Aquaculture Workshop] | ! [http://www.intl-pag.org/17/17-aqua.html Aquaculture Workshop] | ||
! 4:20-4:40 | ! 4:20-4:40 | ||
− | | [http://www.intl-pag.org/17/abstracts/ | + | | [http://www.intl-pag.org/17/abstracts/W04_PAGXVII_025.html A Review Of The Marine Genomics Project, A Web-Based Genomic And Transcriptional Database], Stephen P Ficklin, ''et al.'' |
− | | [[Chado]], [[GBrowse]] | + | | [[Chado]], [[GBrowse]], [[Tripal]] |
+ | |- | ||
+ | ! rowspan="3" | Sunday<br />Jan 11 | ||
+ | ! [http://www.intl-pag.org/17/17-large-insert.html Large Insert DNA Libraries Workshop] | ||
+ | ! 8:25-8:45 | ||
+ | | [http://www.intl-pag.org/17/abstracts/W39_PAGXVII_294.html Use Of The Soybean Physical Map Derived Minimum Tile For BIBAC Plant Transformations Encompassing The Entire Genome], David A Lightfoot | ||
+ | | [[GBrowse]] | ||
|- | |- | ||
− | |||
! [http://www.intl-pag.org/17/17-foresttree.html Forest Trees workshop] | ! [http://www.intl-pag.org/17/17-foresttree.html Forest Trees workshop] | ||
− | ! 2:15-2:30 | + | ! 2:15-2:30 |
− | | [http://www.intl-pag.org/17/abstracts/ | + | | [http://www.intl-pag.org/17/abstracts/W24_PAGXVII_190.html Genomic Tool Development For The Fagaceae], Margaret E. Staton, ''et al.'' |
| [[Chado]] | | [[Chado]] | ||
|- | |- | ||
Line 74: | Line 83: | ||
| [[GBrowse]] | | [[GBrowse]] | ||
|- | |- | ||
− | ! rowspan=" | + | ! rowspan="8" | Monday<br />Jan 12 |
− | ! rowspan="1" | | + | ! rowspan="1" | EVEN Numbered Poster Session |
! rowspan="1" | 10:00-11:30 | ! rowspan="1" | 10:00-11:30 | ||
| [[#Posters|See below]] for a list of relevant posters. | | [[#Posters|See below]] for a list of relevant posters. | ||
Line 101: | Line 110: | ||
| [[CMap]] | | [[CMap]] | ||
|- | |- | ||
− | ! rowspan="1" | | + | ! [http://www.intl-pag.org/17/17-transgene.html Plant Transgene Genetics Workshop] |
+ | ! 2:40-3:00 | ||
+ | | [http://www.intl-pag.org/17/abstracts/W55_PAGXVII_379.html Use Of pCLD04541 Large Insert Clones And A Minimum Tile Path For Plant Transformations Encompassing The Entire Soybean Genome], David A Lightfoot, Hidayat Ullah | ||
+ | | [[GBrowse]] | ||
+ | |- | ||
+ | ! rowspan="1" | ODD Numbered Poster Session | ||
! rowspan="1" | 3:00-4:30 | ! rowspan="1" | 3:00-4:30 | ||
| [[#Posters|See below]] for a list of relevant posters. | | [[#Posters|See below]] for a list of relevant posters. | ||
− | | | + | | |
|- | |- | ||
! Tuesday<br />Jan 13 | ! Tuesday<br />Jan 13 | ||
Line 119: | Line 133: | ||
|- | |- | ||
! 2:40-3:00 | ! 2:40-3:00 | ||
− | | [http://urgi.versailles.inra.fr/projects/Softwares/ GnpIS], The Plant Information System of INRA URGI Bioinformatic Platform, [mailto:delphine.steinbach@versailles.inra.fr Delphine Steinbach] ''et al''. | + | | [http://urgi.versailles.inra.fr/projects/Softwares/ GnpIS], The Plant Information System of INRA URGI Bioinformatic Platform, [mailto:michael.alaux@versailles.inra.fr Michael Alaux], [mailto:delphine.steinbach@versailles.inra.fr Delphine Steinbach] ''et al''. |
| [[Apollo]], [[BioMart]], [[Chado]], [[CMap]], [[GBrowse]] | | [[Apollo]], [[BioMart]], [[Chado]], [[CMap]], [[GBrowse]] | ||
|} | |} | ||
Line 133: | Line 147: | ||
! Components | ! Components | ||
|- | |- | ||
− | ! rowspan=" | + | ! rowspan="11" | EVEN Numbered Poster Session<br />Monday<br />Jan 12 |
− | ! rowspan=" | + | ! rowspan="11" | 10:00-11:30 |
− | + | ||
− | + | ||
|- | |- | ||
− | | [http://www.intl-pag.org/17/abstracts/ | + | | [http://www.intl-pag.org/17/abstracts/P02a_PAGXVII_050.html P050: Use Of The Soybean Physical Map Derived Minimum Tile For BIBAC Plant Transformations Encompassing The Entire Genome], David A Lightfoot |
− | | | + | | [[GBrowse]] |
|- | |- | ||
− | | [http://www.intl-pag.org/17/abstracts/ | + | | [http://www.intl-pag.org/17/abstracts/P02d_PAGXVII_092.html P092: Re-Annotation Of The Physical Map Of Glycine max For Polyploid-Like Regions By BAC End Sequence Driven Whole Genome Shotgun Read Assembly], Navinder Saini, Jeffry L Shultz, David A Lightfoot |
− | + | | [[GBrowse]] | |
− | + | ||
− | + | ||
− | | [[ | + | |
|- | |- | ||
− | | [http://www.intl-pag.org/17/abstracts/ | + | | [http://www.intl-pag.org/17/abstracts/P05f_PAGXVII_364.html P364: SoyBase And The Soybean Breeder’S Toolbox: Updated Features And New Data], David Grant, Rex T. Nelson, Steven B. Cannon, Randy C. Shoemaker |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
| [[CMap]], [[GBrowse]] | | [[CMap]], [[GBrowse]] | ||
|- | |- | ||
− | | [http://www.intl-pag.org/17/abstracts/ | + | | [http://www.intl-pag.org/17/abstracts/P05k_PAGXVII_478.html P478: Identification Of Metabolic Gene Losses In The Cattle Genome], Seongwon Seo, Harris A. Lewin |
+ | | [[Pathway Tools]] | ||
+ | |- | ||
+ | | [http://www.intl-pag.org/17/abstracts/P08a_PAGXVII_782.html P782: Expanding The Utility Of Animal QTLdb], Zhi-Liang Hu, ''et al.'' | ||
| [[BioMart]], [[GBrowse]] | | [[BioMart]], [[GBrowse]] | ||
|- | |- | ||
− | | [http://www.intl-pag.org/17/abstracts/ | + | | [http://www.intl-pag.org/17/abstracts/P08a_PAGXVII_788.html P788: MetaCyc: The Global Reference Database For Metabolic Information], Anuradha Pujar, ''et al.'' |
+ | | [[Pathway Tools]] | ||
+ | |- | ||
+ | | [http://www.intl-pag.org/17/abstracts/P08a_PAGXVII_796.html P796: The ''Hymenoptera'' Genome Database], Justin T. Reese, ''et al.'' | ||
| [[Apollo]] | | [[Apollo]] | ||
|- | |- | ||
− | | [ | + | | [[Media:Cain GI poster.pdf|P824: Comparative Genomics Software Packages At GMOD]], [[User:Scott|Scott Cain]], [[User:Clements|David Clements]], The GMOD Consortium |
| [[Apollo]], [[CMap]], [[GBrowse_syn]], [[Sybil]], [[SynBrowse]], [[Synview]] | | [[Apollo]], [[CMap]], [[GBrowse_syn]], [[Sybil]], [[SynBrowse]], [[Synview]] | ||
|- | |- | ||
− | | [ | + | | [[Media:PAG2009NextGenSeqPoster.pdf|P828: Managing Next Generation Sequence Data With GMOD]], [[User:Clements|Dave Clements]], ''et al.'' |
| [[Chado]], [[GBrowse]] | | [[Chado]], [[GBrowse]] | ||
|- | |- | ||
− | + | | [http://www.intl-pag.org/17/abstracts/C01_PAGXVII_848.html CP848: Structural and Functional Annotation of Wheat and Barley Genome Sequences with TriAnnot Pipeline], Philippe Leroy, ''et al''. | |
− | + | | [[Apollo]] (under consideration), [[GBrowse]] | |
− | | [http://www.intl-pag.org/17/ | + | |- |
+ | |- | ||
+ | ! rowspan="9" | ODD Numbered Poster Session<br>Monday<br />Jan 12 | ||
+ | ! rowspan="9" | 3:00-4:30 | ||
+ | |- | ||
+ | | [http://www.intl-pag.org/17/abstracts/P05f_PAGXVII_371.html P371: Coupled QTL And Association Mapping Soybeans: Examples From Seed Protein And Oil Content And Disease Resistance], Ali Srour, ''et al.'' | ||
| [[GBrowse]] | | [[GBrowse]] | ||
− | + | |- | |
+ | | [http://www.intl-pag.org/17/abstracts/P08a_PAGXVII_783.html P783: The Bovine Genome Database], Christopher P. Childers, ''et al.'' | ||
+ | | [[Apollo]], [[chado]], [[GBrowse]] | ||
+ | |- | ||
+ | | [[Media:PAG2009_poster_Michael_Alaux.pdf|P785: The URGI Bioinformatics Platform: Focus On Genomic Annotation Databases And Tools]], Michael Alaux, Joelle Amselem ''et al.'' | ||
+ | | [[Apollo]], [[Chado]], [[GBrowse]] | ||
+ | |- | ||
+ | | [http://www.intl-pag.org/17/abstracts/P08a_PAGXVII_789.html P789: Integrated Genome Informatics - Current Approaches and Platforms in a Rapidly Changing Environment], [[User:Russellsmithies|Russell Smithies]] | ||
+ | | [[GBrowse]] | ||
+ | |- | ||
+ | | [http://www.intl-pag.org/17/abstracts/P08a_PAGXVII_805.html P805: AlliumMap: An Online Comparative Genomics Resource For ''Allium''], John McCallum, ''et al.'' | ||
+ | | [[CMap]] | ||
+ | |- | ||
+ | | [http://www.intl-pag.org/17/abstracts/C01_PAGXVII_845.html CP845: EcoliWiki And GONUTS: Wiki-Based Systems For Community Annotation], Daniel Renfro ''et al.'' | ||
+ | | [[TableEdit]] | ||
+ | |- | ||
+ | | [http://www.intl-pag.org/17/abstracts/C01_PAGXVII_847.html CP847: TreeGenes: A Forest Tree Genome Database], Jill Wegrzyn, ''et al.'' | ||
+ | | [[CMap]] | ||
+ | |- | ||
+ | | [[Media:PAG2009_poster_URGI_GnpIS.pdf|P849: GnpIS, The Plant Information System Of INRA URGI Bioinformatic Platform]], Delphine Steinbach, Michael Alaux ''et al.'' | ||
+ | | [[Apollo]], [[BioMart]], [[Chado]], [[CMap]], [[GBrowse]] | ||
+ | |- | ||
|} | |} | ||
− | [[Category: | + | [[Category:Education and Outreach]] |
+ | [[Category:Conferences]] |
Latest revision as of 18:16, 2 October 2012
GMOD once again had a strong presence at the Plant and Animal Genome Conference (PAG 2009). PAG was also immediately before the January 2009 GMOD Meeting and many GMOD members attended both meetings.
There were be many, many workshops, computer demos, and posters, either about or using GMOD Components. This page lists only those items that mentioned GMOD Components in their abstracts.
About GMOD Components
Day | Track | Time | Title & Author | Components |
---|---|---|---|---|
Sunday Jan 11 |
Database Resources at the EBI Workshop | 8:10-9:15 | Genome Resources at the EBI: Ensembl and Ensembl Genomes, Bert Overduin, Ensembl Team, Ensembl Genomes Team | BioMart |
Computer & Training Workshop | 1:15-3:25 | The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse, Scott Cain | GBrowse | |
Monday Jan 12 |
EVEN Numbered Poster Session | 10:00-11:30 | See below for a list of relevant posters. | |
Computer Demo | 1:10-1:30 | EcoliWiki and GONUTS: Wiki-Based Systems for Community Annotation, Jim Hu, et al. | TableEdit | |
ODD Numbered Poster Session | 3:00-4:30 | See below for a list of relevant posters. | ||
Wednesday Jan 14 |
Computer & Training Workshop | 10:20-12:30 | Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your syntenic data with GBrowse_syn, Sheldon McKay, Scott Cain, and Dave Clements | GBrowse_syn |
Projects Using GMOD Components
Day | Track | Time | Title & Author | Components |
---|---|---|---|---|
Saturday Jan 10 |
Brassicas Workshop | 11:20-11:40 | Annotation And Data Mining For The Brassica rapa Genome Sequencing Project, Martin Trick, et al. | GBrowse |
Aquaculture Workshop | 4:20-4:40 | A Review Of The Marine Genomics Project, A Web-Based Genomic And Transcriptional Database, Stephen P Ficklin, et al. | Chado, GBrowse, Tripal | |
Sunday Jan 11 |
Large Insert DNA Libraries Workshop | 8:25-8:45 | Use Of The Soybean Physical Map Derived Minimum Tile For BIBAC Plant Transformations Encompassing The Entire Genome, David A Lightfoot | GBrowse |
Forest Trees workshop | 2:15-2:30 | Genomic Tool Development For The Fagaceae, Margaret E. Staton, et al. | Chado | |
Computer Demo | 4:50-5:10 | The Rice Annotation Project Database (RAP-DB): Introduction to the Comparative Analysis between Rice and Other Plant Species, Hiroaki Sakai, et al. | GBrowse | |
Monday Jan 12 |
EVEN Numbered Poster Session | 10:00-11:30 | See below for a list of relevant posters. | |
Computer Demo | 1:30-1:50 | CottonDB: A Resource for Cotton Genome Research, Jing Yu, et al. | CMap | |
1:50-2:10 | Updates to SoyGD: Genome Sequence Search Tools and a Predicted Interactome, David Lightfoot, et al. | GBrowse | ||
2:10-2:30 | The Legume Information System (LIS): An Integrated, Dynamic Comparative Legume Information Resource, Gregory May et al. | CMap | ||
2:10-2:30 | The MaizeGDB Genome Browser, Taner Sen et al. | GBrowse | ||
2:30-2:50 | TreeGenes: A Forest Tree Genome Database, Jill Wegrzyn et al. | CMap | ||
Plant Transgene Genetics Workshop | 2:40-3:00 | Use Of pCLD04541 Large Insert Clones And A Minimum Tile Path For Plant Transformations Encompassing The Entire Soybean Genome, David A Lightfoot, Hidayat Ullah | GBrowse | |
ODD Numbered Poster Session | 3:00-4:30 | See below for a list of relevant posters. | ||
Tuesday Jan 13 |
Computer & Training Workshop | 3:50-6:00 | Using Gramene: A Genomics and Genetics Resource for Rice and other Grasses., Claire Hebbard, and Immanuel Yap | CMap |
Wednesday Jan 14 |
Computer Demo | 2:20-2:40 | Structural and Functional Annotation of Wheat and Barley Genome Sequences with TriAnnot Pipeline, Philippe Leroy et al. | Apollo (under consideration), GBrowse |
2:40-3:00 | GnpIS, The Plant Information System of INRA URGI Bioinformatic Platform, Michael Alaux, Delphine Steinbach et al. | Apollo, BioMart, Chado, CMap, GBrowse |
Posters
All poster sessions are on Monday, January 12.