Difference between revisions of "Annotation"
From GMOD
m (New page: Supporting annotation of biological data is a central goal of GMOD. Annotation can be done computationally or manually using community annotation or by [...) |
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| − | Supporting annotation of biological data is a central goal of GMOD. Annotation can be done computationally or manually using | + | Supporting annotation of biological data is a central goal of GMOD. Annotation can be done computationally or manually using or by [http://biocurator.org/ dedicated curatorial staff]. |
| − | This page is about ''creating'' annotations. GMOD also has a number of solutions for ''[[Visualization|visualizing]] annotations. | + | This page is about ''creating'' annotations. GMOD also has a number of solutions for ''[[Visualization|visualizing]]'' annotations. |
== Genome Annotation == | == Genome Annotation == | ||
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* [[PubSearch]] is a web-based literature curation tool to allow curators to search and annotate genes to keywords from articles. | * [[PubSearch]] is a web-based literature curation tool to allow curators to search and annotate genes to keywords from articles. | ||
| + | [[Category:Community Annotation|community annotation or by [http://biocurator.org/ dedicated curatorial staff].]] | ||
[[Category:Annotation]] | [[Category:Annotation]] | ||
Revision as of 23:30, 2 June 2009
Supporting annotation of biological data is a central goal of GMOD. Annotation can be done computationally or manually using or by dedicated curatorial staff.
This page is about creating annotations. GMOD also has a number of solutions for visualizing annotations.
Contents
Genome Annotation
Manual Genome Annotation
- Apollo is the manual genome annotation tool of choice for GMOD users.
Computational Genome Annotation
- MAKER is a pipeline for annotating eukayotic genomic data.
- DIYA is a (soon to be added) pipeline for annotation prokaryotic genomic data.
- Ergatis is a web-based utility for creating and running reusable computational analysis pipelines.
- Galaxy allows users to search remote resources, combine data from independent queries, and visualize/save the results.
- Genome grid project is a package of genome data analysis with methods, protocols, and documentation.
Publication Annotation
- Textpresso is a text mining package for biological literature.
- PubSearch is a web-based literature curation tool to allow curators to search and annotate genes to keywords from articles.
