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Revision as of 16:58, 26 October 2010
Contents
Introduction
The Apollo genome annotation editor, which is a Java application, allows users to view, create, and edit genomic annotations in a graphical environment. WebApollo is a new project that aims to provide similar functionality in a client-server web-based environment.
Our overall goal is to develop a lightweight Web 2.0 infrastructure that will offer easy-to-use tools for collaborative genome annotation. This includes the design and implementation of:
- a web browser-based version of Apollo built on top of JBrowse
- full support for two-way client-server exchange of genome annotations (DAS2)
- an annotation tracking system designed to support collaborative genome research projects
The WebApollo project is a collaboration between Suzanna Lewis's group at LBNL (the Berkeley Bioinformatics Open-source Projects group, or BBOP) and Chris Elsik's group at Georgetown.
(Funding?)
Project members
- Suzanna Lewis (PI, LBNL)
- Ian Holmes (PI, UC Berkeley)
- Chris Elsik (PI, Georgetown)
- Chris Childers (Georgetown)
- Nomi Harris (LBNL)
- Gregg Helt (LBNL)
- Ed Lee (LBNL)
- Justin Reese (Georgetown)
- Mitch Skinner (UC Berkeley)
- Jay Sundaram (Georgetown)
Links
Meetings
Project meetings normally take place on Thursdays at 1:30 or 1:45 California time.
- Notes from WebApollo Hackathon, Healdsburg, CA, Sept 27 - Oct 1, 2010
(todo: add other meeting notes)
