Name
|
Description
|
Location
|
Chado
|
A. fumigatus TIGR/Sanger Assembly
|
|
http://fungus.kbrin.uky.edu/cgi-bin/gbrowse/A_fumigatus_tigr_tel_100k
|
|
ANISEED
|
Ascidian Network for In Situ Expression and Embryological Data
|
http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/
|
|
AntonosporaDB
|
|
http://gmod.mbl.edu/perl/site/antonospora01
|
|
AphidBase
|
Pea aphid genome
|
http://www.aphidbase.com/
|
Yes
|
ApiDB
|
|
http://apidb.org/apidb/
|
|
ATIDB
|
Arabidopsis
|
http://atidb.org
|
|
Aureococcus
|
|
http://gmod.mbl.edu/perl/site/aureococcus
|
|
AZM-to-BAC Viewer
|
|
http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=01_azm2bac
|
|
AZM-to-Gene Viewer
|
|
http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=02_azm2gene
|
|
BeeBase
|
|
http://racerx00.tamu.edu/bee_resources.html
|
|
BeetleBase
|
Gbrowse UI
|
http://www.bioinformatics.ksu.edu/BeetleBase/
|
Yes
|
BGD
|
Bovine Genome Database
|
http://bovinegenome.org/
|
|
BioHealthBase
|
BioDefense Public Health Database
|
http://www.biohealthbase.org/GSearch/
|
|
Blochmannia pennsylvanicus
|
|
http://gmod.mbl.edu/perl/site/blochmannia06
|
|
Bovine QTL Viewer
|
|
http://bovineqtl.tamu.edu
|
|
Brachionus plicatilis A
|
|
http://gmod.mbl.edu/perl/site/bplicatilisa
|
|
Brachionus plicatilis B
|
|
http://gmod.mbl.edu/perl/site/bplicatilisb
|
|
Cattle EST Gene Family Database
|
|
http://racerx00.tamu.edu/cgi-test/searchCattleDatabase.html
|
|
CGD
|
Candida Genome Database
|
http://www.candidagenome.org/cgi-bin/gbrowse/candida_20/
|
|
CGL
|
Comparative Genomics Library
|
http://www.yandell-lab.org/cgl/
|
|
The Comprehensive Antibiotic Resistance Database
|
|
http://arpcard.mcmaster.ca/
|
Yes
|
cosmoss.org
|
The Bryophyte Genomics Resource - Physcomitrella patens Annotation
|
http://www.cosmoss.org
|
|
ChromDB
|
Plant Chromatin Database
|
http://www.chromdb.org/
|
|
Chromosome 7 Annotation Project
|
|
http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2
|
|
CryptoDB
|
|
http://cryptodb.org
|
|
CSHLmpd
|
Mammalian Promoter Database
|
http://rulai.cshl.edu/cshlmpd/credit.html
|
|
Database of Genomic Variants
|
|
http://projects.tcag.ca/variation/cgi-bin/gbrowse/hg17
|
|
DictyBase
|
|
http://www.dictybase.org
|
Yes
|
DroSpeGe
|
|
http://insects.eugenes.org/DroSpeGe/
|
|
EcoCyc
|
|
http://ecocyc.org/
|
|
Emiliania huxleyi
|
|
http://gmod.mbl.edu/emiliania_huxleyi
|
|
Enterocytozoon bieneusi
|
|
http://gmod.mbl.edu/perl/site/ebieneusi
|
|
Environmental Sampling Site 396, Fosmid 68
|
|
http://gmod.mbl.edu/perl/site/env396_fosmid68
|
|
Environmental Sampling Site 396, Fosmid 87
|
|
http://gmod.mbl.edu/perl/site/env396_fosmid87
|
|
Environmental Sampling Site 396, Fosmids_6_ 56
|
|
http://gmod.mbl.edu/perl/site/env396_fosmids_6_56
|
|
Environmental Sampling Site Loihi, Red Clone 1
|
|
http://gmod.mbl.edu/perl/site/envloihi_clone1
|
|
Environmental Sampling Site Loihi, Red Clone 2
|
|
http://gmod.mbl.edu/perl/site/envloihi_clone2
|
|
FlyBase
|
A Database of Drosophila Genes & Genomes
|
http://www.flybase.org
|
Yes
|
Fungal Comparitive Genomics
|
|
http://fungal.genome.duke.edu/
|
|
Fungal Telomere Browser
|
|
http://genome.kbrin.uky.edu/fungi_tel/browser.html
|
|
Gallus gallus
|
Gallus gallus SAGE
|
http://gmod.mbl.edu/perl/site/g_gallus
|
|
Gallus Genome Browser
|
|
http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken
|
|
GeneDB
|
Pathogen Sequenceing Unit
|
http://www.genedb.org
|
Yes
|
giardia14
|
|
http://gmod.mbl.edu/perl/site/giardia14
|
|
GiardiaDB
|
|
http://gmod.mbl.edu/perl/site/giardia?page=intro
|
|
GrainGenes
|
|
http://wheat.pw.usda.gov/
|
|
Gramene
|
|
http://www.gramene.org
|
|
HapMap
|
|
http://www.hapmap.org/cgi-perl/gbrowse/
|
|
Human 2q33
|
|
http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/
|
|
Human Genome Segmental Duplication Database
|
|
http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36
|
|
IVDB
|
Influenza Virus Database
|
http://influenza.genomics.org.cn/
|
|
JCVI
|
J. Craig Venter Institute
|
http://huref.jcvi.org/browse.html
|
Yes
|
Leishmania tarentolae RNA editing database
|
|
http://gmod.mbl.edu/gb/gbrowse/ltgrna
|
|
LIS
|
Legume Information System
|
http://www.comparative-legumes.org/
|
|
MAGI
|
Maize Assembled Genomic Island
|
http://magi.plantgenomics.iastate.edu/
|
|
Marinobacter aquaeolei
|
|
http://gmod.mbl.edu/perl/site/marinobacter_jgi
|
|
Marinobacter aquaeolei FOSMID 38/33.
|
|
http://gmod.mbl.edu/perl/site/marinobacter
|
|
MGI
|
|
http://www.informatics.jax.org/
|
|
MSU Rice Genome Browser
|
|
http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice
|
|
Non-Human Segmental Duplication Database
|
|
http://projects.tcag.ca/xenodup/gbrowse.php
|
|
OMAP
|
Oryza Map Alignment Project
|
http://www.omap.org/
|
|
Oncorhynchus tshawytscha
|
Chinook salmon SAGE
|
http://gmod.mbl.edu/perl/site/salmontrout
|
|
OryGenesDB
|
|
http://orygenesdb.cirad.fr/
|
|
Oryza Chromosome 8
|
|
http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/
|
|
OryzaSNP
|
|
http://irfgc.irri.org/cgi-bin/gbrowse
|
|
ParameciumDB
|
|
http://paramecium.cgm.cnrs-gif.fr/
|
Yes
|
PeanutMap
|
|
http://peanutgenetics.tamu.edu/cmap/
|
|
Philodina roseola
|
|
http://gmod.mbl.edu/perl/site/proseola
|
|
PlantsDB
|
MIPS PlantsDB
|
http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse
|
|
PlasmoDB
|
Plasmodium Genome Resource
|
http://www.plasmodb.org/
|
|
PopGenIE
|
The Populus Genome Integrative Explorer
|
http://www.popgenie.org/
|
|
PossumBase
|
|
http://www.possumbase.org.nz/cgi-bin/gbrowse/mondom4/
|
|
PseudoCAP
|
Pseudomonas Genome Database
|
http://v2.pseudomonas.com/whats_new.jsp
|
|
PUMAdb
|
Princeton Microarray Database, Chado
|
http://puma.princeton.edu/
|
|
RGD
|
Rat Genome Database
|
http://rgd.mcw.edu
|
|
Schistosoma mansoni
|
|
http://gmod.mbl.edu/perl/site/s_mansonigenome
|
|
Schistosoma mansoni EST
|
|
http://gmod.mbl.edu/perl/site/s_mansoniest
|
|
SCRI Plant Bioinformatics Group
|
|
http://bioinf.scri.sari.ac.uk/
|
Yes
|
SGD
|
|
http://db.yeastgenome.org/cgi-bin/gbrowse/scgenome/
|
|
S. cerevisiae Proteome Browser
|
|
http://db.yeastgenome.org/cgi-bin/gbrowse/scproteome/
|
|
SGD Lite
|
|
http://sgdlite.princeton.edu/
|
|
SmedGD
|
Planaria ESTs
|
http://smedgd.neuro.utah.edu/
|
Yes
|
Sol Genomics Network
|
|
http://www.sgn.cornell.edu/
|
Yes
|
SoyBase
|
USDA Soybean Genetics and Genomics Database
|
http://soybase.org/
|
No
|
Soybean GBrowse Database
|
|
http://soybeangenome.siu.edu/
|
|
SpBase
|
Genome sequence and annotations produced by the Baylor College of Medicine Human Genome Sequencing Center and the sea urchin research community.
|
http://spbase.org
|
|
Synechococcus 4320_2
|
|
http://gmod.mbl.edu/perl/site/syn_4320_2
|
|
Synechococcus CC9605
|
|
http://gmod.mbl.edu/perl/site/syn_cc9605
|
|
Synechococcus CC9902
|
|
http://gmod.mbl.edu/perl/site/syn_cc9902
|
|
Synechococcus RS9916
|
|
http://gmod.mbl.edu/perl/site/syn_rs9916
|
|
Synechococcus RS9917
|
|
http://gmod.mbl.edu/perl/site/syn_rs9917
|
|
Synechococcus WH5701
|
|
http://gmod.mbl.edu/perl/site/syn_wh5701
|
|
Synechococcus WH7805
|
|
http://gmod.mbl.edu/perl/site/syn_wh7805
|
|
T1DBase
|
Type 1 Diabetes Database
|
http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display
|
|
TAIR
|
|
http://www.arabidopsis.org
|
|
TGD
|
Tetrahymena Genome Database
|
http://www.ciliate.org/help/Locus.shtml
|
|
TGI
|
The Gene Index Project
|
http://biocomp.dfci.harvard.edu/tgi/
|
|
TIGR
|
The Institute for Genomic Research
|
http://www.tigr.org
|
Yes
|
TIGR Medicago BACs
|
|
http://www.tigr.org/tigr-scripts/medicago/gbrowse_bacs.pl
|
|
ToxoDB
|
Toxoplasma gondii database
|
http://v3-0.toxodb.org/
|
|
TriAnnot BAC Viewer
|
|
http://urgi.infobiogen.fr/projects/TriAnnot/GBrowse.php
|
|
|
Trichomona vaginalis
|
http://www.uclaaccess.ucla.edu/UCLAACCESS/Web/Faculty.aspx?ri=58
|
Yes
|
TropGENE DB
|
genetic and genomic information about tropical crops studied by Cirad.
|
http://tropgenedb.cirad.fr/
|
|
Trypanosoma brucei brucei
|
|
http://gmod.mbl.edu/perl/site/t_bruceibrucei02
|
|
Trypanosoma brucei brucei GenBank Entries
|
|
http://gmod.mbl.edu/perl/site/t_bruceigenbank
|
|
Trypanosoma brucei brucei RNA editing database
|
|
http://gmod.mbl.edu/gb/gbrowse/grna
|
|
Trypanosoma brucei gambiense
|
|
http://gmod.mbl.edu/perl/site/t_bruceigambiense
|
|
Trypanosoma brucei rhodesiense
|
|
http://gmod.mbl.edu/perl/site/t_bruceirhodesiense
|
|
Trypanosoma cruzi
|
|
http://gmod.mbl.edu/perl/site/t_cruzi
|
|
UNH HCGS Tetraodon Genome Browser
|
Gbrowse plus GFF
|
http://hcgs.unh.edu/gbrowse/
|
|
VectorBase
|
Chado, DAS, Apollo
|
http://www.vectorbase.org
|
Yes
|
Vicogenta
|
Viewer for Comparing Genomes to Arabidopsis
|
http://nypg.bio.nyu.edu/vicogenta/
|
|
wFleaBase
|
Daphnia
|
http://wfleabase.org/
|
Yes
|
WormBase
|
|
http://www.wormbase.org
|
|
XanthusBase
|
|
http://www.xanthusbase.org/
|
Yes
|
Xenbase
|
|
http://www.xenbase.org/
|
|
Xmap
|
Human X chromosome map for SNP and STR markers used in genetic genealogy and anthropology (public available on 3/2/2009)
|
http://xmap.ftdna.com/
|
No
|
Ymap
|
Human Y chromosome map for SNP and STR markers used in genetic genealogy and anthropology (public available on 3/2/2009)
|
http://ymap.ftdna.com/
|
No
|
|
Microarray data, Chado, H. sapiens
|
http://genetics.ucla.edu/labs/nelson/
|
Yes
|
|
|
http://www.wicell.org
|
Yes
|