| Name
| Description
| Location
| Chado
|
| A. fumigatus TIGR/Sanger Assembly
|
| http://fungus.kbrin.uky.edu/cgi-bin/gbrowse/A_fumigatus_tigr_tel_100k
|
|
| ANISEED
| Ascidian Network for In Situ Expression and Embryological Data
| http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/
|
|
| AntonosporaDB
|
| http://gmod.mbl.edu/perl/site/antonospora01
|
|
| ApiDB
|
| http://apidb.org/apidb/
|
|
| ATIDB
| Arabidopsis
| http://atidb.org
|
|
| Aureococcus
|
| http://gmod.mbl.edu/perl/site/aureococcus
|
|
| AZM-to-BAC Viewer
|
| http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=01_azm2bac
|
|
| AZM-to-Gene Viewer
|
| http://maizeapache.ddpsc.org/cgi-bin/gbrowse.cgi?source=02_azm2gene
|
|
| BeeBase
|
| http://racerx00.tamu.edu/bee_resources.html
|
|
| BeetleBase
| Gbrowse UI
| http://www.bioinformatics.ksu.edu/BeetleBase/
| Yes
|
| BGD
| Bovine Genome Database
| http://bovinegenome.org/
|
|
| BioHealthBase
| BioDefense Public Health Database
| http://www.biohealthbase.org/GSearch/
|
|
| Blochmannia pennsylvanicus
|
| http://gmod.mbl.edu/perl/site/blochmannia06
|
|
| Bovine QTL Viewer
|
| http://bovineqtl.tamu.edu
|
|
| Brachionus plicatilis A
|
| http://gmod.mbl.edu/perl/site/bplicatilisa
|
|
| Brachionus plicatilis B
|
| http://gmod.mbl.edu/perl/site/bplicatilisb
|
|
| Cattle EST Gene Family Database
|
| http://racerx00.tamu.edu/cgi-test/searchCattleDatabase.html
|
|
| CGD
| Candida Genome Database
| http://www.candidagenome.org/cgi-bin/gbrowse/candida_20/
|
|
| CGL
| Comparative Genomics Library
| http://www.yandell-lab.org/cgl/
|
|
| ChromDB
| Plant Chromatin Database
| http://www.chromdb.org/
|
|
| Chromosome 7 Annotation Project
|
| http://www.chr7.org/cgi-bin/gbrowse/gbrowse/chr7_v2
|
|
| CryptoDB
|
| http://cryptodb.org
|
|
| CSHLmpd
| Mammalian Promoter Database
| http://rulai.cshl.edu/cshlmpd/credit.html
|
|
| Database of Genomic Variants
|
| http://projects.tcag.ca/variation/cgi-bin/gbrowse/hg17
|
|
| DictyBase
|
| http://www.dictybase.org
| Yes
|
| DroSpeGe
|
| http://insects.eugenes.org/DroSpeGe/
|
|
| EcoCyc
|
| http://ecocyc.org/
|
|
| Emiliania huxleyi
|
| http://gmod.mbl.edu/emiliania_huxleyi
|
|
| Enterocytozoon bieneusi
|
| http://gmod.mbl.edu/perl/site/ebieneusi
|
|
| Environmental Sampling Site 396, Fosmid 68
|
| http://gmod.mbl.edu/perl/site/env396_fosmid68
|
|
| Environmental Sampling Site 396, Fosmid 87
|
| http://gmod.mbl.edu/perl/site/env396_fosmid87
|
|
| Environmental Sampling Site 396, Fosmids_6_ 56
|
| http://gmod.mbl.edu/perl/site/env396_fosmids_6_56
|
|
| Environmental Sampling Site Loihi, Red Clone 1
|
| http://gmod.mbl.edu/perl/site/envloihi_clone1
|
|
| Environmental Sampling Site Loihi, Red Clone 2
|
| http://gmod.mbl.edu/perl/site/envloihi_clone2
|
|
| FlyBase
| A Database of Drosophila Genes & Genomes
| http://www.flybase.org
| Yes
|
| Fungal Comparitive Genomics
|
| http://fungal.genome.duke.edu/
|
|
| Fungal Telomere Browser
|
| http://genome.kbrin.uky.edu/fungi_tel/browser.html
|
|
| Gallus gallus
| Gallus gallus SAGE
| http://gmod.mbl.edu/perl/site/g_gallus
|
|
| Gallus Genome Browser
|
| http://genome.ucsc.edu/cgi-bin/hgGateway?org=Chicken
|
|
| GeneDB
| Pathogen Sequenceing Unit
| http://www.genedb.org
| Yes
|
| giardia14
|
| http://gmod.mbl.edu/perl/site/giardia14
|
|
| GiardiaDB
|
| http://gmod.mbl.edu/perl/site/giardia?page=intro
|
|
| GrainGenes
|
| http://wheat.pw.usda.gov/
|
|
| Gramene
|
| http://www.gramene.org
|
|
| HapMap
|
| http://www.hapmap.org/cgi-perl/gbrowse/
|
|
| Human 2q33
|
| http://t1dbase.cimr.cam.ac.uk/cgi-bin/gbrowse/2q33/
|
|
| Human Genome Segmental Duplication Database
|
| http://projects.tcag.ca/cgi-bin/duplication/dupbrowse/human_b36
|
|
| IVDB
| Influenza Virus Database
| http://influenza.genomics.org.cn/
|
|
| JCVI
| J. Craig Venter Institute
| http://huref.jcvi.org/browse.html
| Yes
|
| Leishmania tarentolae RNA editing database
|
| http://gmod.mbl.edu/gb/gbrowse/ltgrna
|
|
| LIS
| Legume Information System
| http://www.comparative-legumes.org/
|
|
| MAGI
| Maize Assembled Genomic Island
| http://magi.plantgenomics.iastate.edu/
|
|
| Marinobacter aquaeolei
|
| http://gmod.mbl.edu/perl/site/marinobacter_jgi
|
|
| Marinobacter aquaeolei FOSMID 38/33.
|
| http://gmod.mbl.edu/perl/site/marinobacter
|
|
| MGI
|
| http://www.informatics.jax.org/
|
|
| MSU Rice Genome Browser
|
| http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice
|
|
| Non-Human Segmental Duplication Database
|
| http://projects.tcag.ca/xenodup/gbrowse.php
|
|
| OMAP
| Oryza Map Alignment Project
| http://www.omap.org/
|
|
| Oncorhynchus tshawytscha
| Chinook salmon SAGE
| http://gmod.mbl.edu/perl/site/salmontrout
|
|
| OryGenesDB
|
| http://orygenesdb.cirad.fr/
|
|
| Oryza Chromosome 8
|
| http://map.lab.nig.ac.jp/cgi-bin/gbrowse/Oryza_chr8/
|
|
| OryzaSNP
|
| http://irfgc.irri.org/cgi-bin/gbrowse
|
|
| ParameciumDB
|
| http://paramecium.cgm.cnrs-gif.fr/
| Yes
|
| PeanutMap
|
| http://peanutgenetics.tamu.edu/cmap/
|
|
| Philodina roseola
|
| http://gmod.mbl.edu/perl/site/proseola
|
|
| PlantsDB
| MIPS PlantsDB
| http://mips.gsf.de/cgi-bin/proj/plant/gbrowse/synbrowse
|
|
| PlasmoDB
| Plasmodium Genome Resource
| http://www.plasmodb.org/
|
|
| PossumBase
|
| http://www.possumbase.org.nz/cgi-bin/gbrowse/mondom4/
|
|
| PseudoCAP
| Pseudomonas Genome Database
| http://v2.pseudomonas.com/whats_new.jsp
|
|
| PUMAdb
| Princeton Microarray Database, Chado
| http://puma.princeton.edu/
|
|
| RGD
| Rat Genome Database
| http://rgd.mcw.edu
|
|
| Schistosoma mansoni
|
| http://gmod.mbl.edu/perl/site/s_mansonigenome
|
|
| Schistosoma mansoni EST
|
| http://gmod.mbl.edu/perl/site/s_mansoniest
|
|
| SCRI Plant Bioinformatics Group
|
| http://bioinf.scri.sari.ac.uk/
| Yes
|
| SGD
|
| http://db.yeastgenome.org/cgi-bin/gbrowse/scgenome/
|
|
| S. cerevisiae Proteome Browser
|
| http://db.yeastgenome.org/cgi-bin/gbrowse/scproteome/
|
|
| SGD Lite
|
| http://sgdlite.princeton.edu/
|
|
| SmedGD
| Planaria ESTs
| http://smedgd.neuro.utah.edu/
| Yes
|
| SOL Genomics Network
|
| http://www.sgn.cornell.edu/
| Yes
|
| SoyBase
| USDA Soybean Genetics and Genomics Database
| http://soybase.org/
| No
|
| Soybean GBrowse Database
|
| http://soybeangenome.siu.edu/
|
|
| SpBase
| Genome sequence and annotations produced by the Baylor College of Medicine Human Genome Sequencing Center and the sea urchin research community.
| http://spbase.org
|
|
| Synechococcus 4320_2
|
| http://gmod.mbl.edu/perl/site/syn_4320_2
|
|
| Synechococcus CC9605
|
| http://gmod.mbl.edu/perl/site/syn_cc9605
|
|
| Synechococcus CC9902
|
| http://gmod.mbl.edu/perl/site/syn_cc9902
|
|
| Synechococcus RS9916
|
| http://gmod.mbl.edu/perl/site/syn_rs9916
|
|
| Synechococcus RS9917
|
| http://gmod.mbl.edu/perl/site/syn_rs9917
|
|
| Synechococcus WH5701
|
| http://gmod.mbl.edu/perl/site/syn_wh5701
|
|
| Synechococcus WH7805
|
| http://gmod.mbl.edu/perl/site/syn_wh7805
|
|
| T1DBase
| Type 1 Diabetes Database
| http://t1dbase.org/cgi-bin/dispatcher.cgi/Welcome/display
|
|
| TAIR
|
| http://www.arabidopsis.org
|
|
| TGD
| Tetrahymena Genome Database
| http://www.ciliate.org/help/Locus.shtml
|
|
| TGI
| The Gene Index Project
| http://biocomp.dfci.harvard.edu/tgi/
|
|
| TIGR
| The Institute for Genomic Research
| http://www.tigr.org
| Yes
|
| TIGR Medicago BACs
|
| http://www.tigr.org/tigr-scripts/medicago/gbrowse_bacs.pl
|
|
| ToxoDB
| Toxoplasma gondii database
| http://v3-0.toxodb.org/
|
|
| TriAnnot BAC Viewer
|
| http://urgi.infobiogen.fr/projects/TriAnnot/GBrowse.php
|
|
| TropGENE DB
| genetic and genomic information about tropical crops studied by Cirad.
| http://tropgenedb.cirad.fr/
|
|
| Trypanosoma brucei brucei
|
| http://gmod.mbl.edu/perl/site/t_bruceibrucei02
|
|
| Trypanosoma brucei brucei GenBank Entries
|
| http://gmod.mbl.edu/perl/site/t_bruceigenbank
|
|
| Trypanosoma brucei brucei RNA editing database
|
| http://gmod.mbl.edu/gb/gbrowse/grna
|
|
| Trypanosoma brucei gambiense
|
| http://gmod.mbl.edu/perl/site/t_bruceigambiense
|
|
| Trypanosoma brucei rhodesiense
|
| http://gmod.mbl.edu/perl/site/t_bruceirhodesiense
|
|
| Trypanosoma cruzi
|
| http://gmod.mbl.edu/perl/site/t_cruzi
|
|
| UNH HCGS Tetraodon Genome Browser
| Gbrowse plus GFF
| http://hcgs.unh.edu/gbrowse/
|
|
| VectorBase
| Chado, DAS, Apollo
| http://www.vectorbase.org
| Yes
|
| Vicogenta
| Viewer for Comparing Genomes to Arabidopsis
| http://nypg.bio.nyu.edu/vicogenta/
|
|
| wFleaBase
| Daphnia
| http://wfleabase.org/
| Yes
|
| WormBase
|
| http://www.wormbase.org
|
|
| XanthusBase
|
| http://www.xanthusbase.org/
| Yes
|
| Xenbase
|
| http://www.xenbase.org/
|
|
|
| Trichomona vaginalis
| http://www.uclaaccess.ucla.edu/UCLAACCESS/Web/Faculty.aspx?ri=58
| Yes
|
|
| Microarray data, Chado, H. sapiens
| http://genetics.ucla.edu/labs/nelson/
| Yes
|
|
|
| http://www.wicell.org
| Yes
|
