C briggsae.syn
From GMOD
This is the species database for C. briggsae. This is one of the three species currently represented in the instance of GBrowse_syn that is installed at WormBase. The species config file con be a normal GBrowse config file or can a a simplified version as shown here.
[GENERAL]
description = C. briggsae Database
db_adaptor = Bio::DB::GFF
db_args = -adaptor dbi::mysql
-dsn dbi:mysql:c_briggsae
-user nobody
plugins = GFFDumper
aggregators = gene{coding_exon}
# Web site configuration info
buttons = images/buttons
tmpimages = tmp
# max and default segment sizes for detailed view
max segment = 400000
automatic classes = CDS Transcript
[CG]
label = 1
description = 1
feature = gene
category = Genes
glyph = transcript2
utr_color = gray
font2color = blue
height = 6
key = Gene Models
description = 1
label = 1
bgcolor = sub {
my $flip = pop->panel->flip;
my $strand = shift->strand;
return $strand < 0 ? 'violet' : 'turquoise' if $flip;
return $strand > 0 ? 'violet' : 'turquoise';
}
[CG:100001]
label = 0
description = 0
[CG:150000]
glyph = generic
feature = CDS