Difference between revisions of "Zheng's installation notes"
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==install prerequisites== | ==install prerequisites== | ||
| + | ===install [http://www.postgresql.org/ postgresql]=== | ||
| + | *install both client and server by yum. | ||
| + | |||
| + | |||
===install [http://search.cpan.org/~sendu/bioperl-1.5.2_102/ bioperl live]=== | ===install [http://search.cpan.org/~sendu/bioperl-1.5.2_102/ bioperl live]=== | ||
| Line 31: | Line 35: | ||
===install [http://sourceforge.net/projects/geneontology go-dev]=== | ===install [http://sourceforge.net/projects/geneontology go-dev]=== | ||
download and unpack the go-dev package since need to set the GO_ROOT environment variable. Although right now only a perl parser module for GO is needed. | download and unpack the go-dev package since need to set the GO_ROOT environment variable. Although right now only a perl parser module for GO is needed. | ||
| − | * in .bash_profile add line | + | *in .bash_profile add line |
export GO_ROOT="$HOME/go-dev" | export GO_ROOT="$HOME/go-dev" | ||
| − | * install GO::Parser | + | *install GO::Parser |
[zha@localhost ~]$ sudo cpan | [zha@localhost ~]$ sudo cpan | ||
Password: | Password: | ||
cpan[1]> install GO::Parser | cpan[1]> install GO::Parser | ||
Revision as of 22:22, 19 March 2007
Back to Chado New Users
Contents
general information
There suppose to be an easy way and a hard way to install Chado database on Fedora:
the easy way: use an existing rpm package. I have not tried it. but you can find information at installation using an RPM
the hard way: install by source. But yum makes it easier. The following is my note on installation of Chado on Fedora 6.
before you start
you can be a superuser or you can sudo to install packages;
you have yum installed in your path;
you have cpan installed in your path;
you have cvs installed in your path;
you have read the chado INSTALL document
get chado schema from cvs
see Chado_From_CVS, issue cvs command at my home directory.
install prerequisites
install postgresql
- install both client and server by yum.
install bioperl live
[zha@localhost ~]$ sudo cpan Password: cpan[1]> install S/SE/SENDU/bioperl-1.5.2_102
install go-dev
download and unpack the go-dev package since need to set the GO_ROOT environment variable. Although right now only a perl parser module for GO is needed.
- in .bash_profile add line
export GO_ROOT="$HOME/go-dev"
- install GO::Parser
[zha@localhost ~]$ sudo cpan Password: cpan[1]> install GO::Parser
