Difference between revisions of "Zheng's installation notes"
(→install [http://sourceforge.net/projects/geneontology go-dev]) |
(→install prerequisites) |
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* in .bash_profile add line | * in .bash_profile add line | ||
export GO_ROOT="$HOME/go-dev" | export GO_ROOT="$HOME/go-dev" | ||
− | * | + | * install GO::Parser |
+ | [zha@localhost ~]$ sudo cpan | ||
+ | Password: | ||
+ | cpan[1]> install GO::Parser |
Revision as of 22:17, 19 March 2007
Back to Chado New Users
Contents
general information
There suppose to be an easy way and a hard way to install Chado database on Fedora:
the easy way: use an existing rpm package. I have not tried it. but you can find information at installation using an RPM
the hard way: install by source. But yum makes it easier. The following is my note on installation of Chado on Fedora 6.
before you start
you can be a superuser or you can sudo to install packages;
you have yum installed in your path;
you have cpan installed in your path;
you have cvs installed in your path;
you have read the chado INSTALL document
get chado schema from cvs
see Chado_From_CVS, issue cvs command at my home directory.
install prerequisites
install bioperl live
[zha@localhost ~]$ sudo cpan Password: cpan[1]> install S/SE/SENDU/bioperl-1.5.2_102
install go-dev
download and unpack the go-dev package since need to set the GO_ROOT environment variable. Although right now only a perl parser module for GO is needed.
- in .bash_profile add line
export GO_ROOT="$HOME/go-dev"
- install GO::Parser
[zha@localhost ~]$ sudo cpan Password: cpan[1]> install GO::Parser