User talk:RobertBuels

(add on JBrowse)

JBrowse Configuration Guide

• Configuration Guide
  • Formatting reference sequences (e.g. from FASTA files, or a Chado database)
  • Creating feature tracks (e.g. from BED or GFF files, a Chado database, or the UCSC genome browser)
  • Creating image tracks (e.g. from WIG files)
  • Making features searchable by name
  • Removing tracks
  • Compressing data stored on the server
  • Using callbacks to customize feature tracks

• Additional topics:
  • Using Configuration Files with biodb-to-json.pl
  • Using a Database

Anonymous Usage Statistics

JBrowse instances report usage statistics to the JBrowse developers. This data is very important to the JBrowse project, since it is used to make the case to grant agencies for continuing to fund JBrowse development. No research data is transmitted, the data collected is limited to standard Google Analytics, along with a count of how many tracks the JBrowse instance has, how many reference sequences are present, their average length, and what types of tracks (wiggle, feature, etc) are present. Users can disable usage statistics by setting suppressUsageStatistics: true in the JBrowse configuration.