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| − | (add on JBrowse)
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| − | = JBrowse Configuration Guide =
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| − | * [[JBrowse Configuration Guide|Configuration Guide]]
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| − | ** [[JBrowse Configuration Guide#Reference Sequences|Formatting reference sequences]] (e.g. from FASTA files, or a Chado database)
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| − | ** [[JBrowse Configuration Guide#Feature Tracks|Creating feature tracks]] (e.g. from BED or GFF files, a Chado database, or the UCSC genome browser)
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| − | ** [[JBrowse Configuration Guide#Image Tracks|Creating image tracks]] (e.g. from WIG files)
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| − | ** [[JBrowse Configuration Guide#Searchable Names|Making features searchable by name]]
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| − | ** [[JBrowse Configuration Guide#Removing Tracks|Removing tracks]]
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| − | ** [[JBrowse Configuration Guide#Compressing data stored on the server|Compressing data stored on the server]]
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| − | ** [[JBrowse Configuration Guide#Using callbacks to customize feature tracks | Using callbacks to customize feature tracks ]]
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| − | * Additional topics:
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| − | ** [[JBrowseDev/Using Configuration Files With JBrowse|Using Configuration Files with biodb-to-json.pl]]
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| − | ** [[JBrowseDev/Using a Database With JBrowse|Using a Database]]
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| − | = Anonymous Usage Statistics =
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| − | JBrowse instances report usage statistics to the JBrowse
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| − | developers. This data is very important to the JBrowse project,
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| − | since it is used to make the case to grant agencies for continuing
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| − | to fund JBrowse development. No research data is transmitted, the
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| − | data collected is limited to standard Google Analytics, along with
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| − | a count of how many tracks the JBrowse instance has, how many
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| − | reference sequences are present, their average length, and what
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| − | types of tracks (wiggle, feature, etc) are present. Users can
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| − | disable usage statistics by setting <code>suppressUsageStatistics: true</code>
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| − | in the JBrowse configuration.
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| − |
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| − | = Configuring Faceted Browsing =
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| − | = Configuring Search Autocompletion =
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