Difference between revisions of "PAG 2013"

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[[File:PAG-2013.jpg|right|link=http://www.intlpag.org/2013/|Plant and Animal Genomes conference, aka PAG XXI]]
 
[[File:PAG-2013.jpg|right|link=http://www.intlpag.org/2013/|Plant and Animal Genomes conference, aka PAG XXI]]
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GMOD will be out in force at the [http://www.intlpag.org/2013/ Plant and Animal Genomes (PAG)] conference later this month. GMOD content includes:
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GMOD was out in force at the [http://www.intlpag.org/2013/ Plant and Animal Genomes (PAG)] conference in January 2013. In addition to the day-long workshop on GMOD tools, there were also posters and presentations from many GMOD users, as well as from developers of GMOD tools.
 +
 
 +
==Core GMOD Content==
 +
 
 +
There were a number of items focussed on the tools and services that GMOD provides. These were:
  
 
{| class="wikitable"
 
{| class="wikitable"
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| Sun. Jan. 13  || 1:30 pm - 3:40 pm || 1530 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1CAA Generic Genome Browser] ||  Workshop
 
| Sun. Jan. 13  || 1:30 pm - 3:40 pm || 1530 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1CAA Generic Genome Browser] ||  Workshop
 
|-
 
|-
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| Mon. Jan. 14  || 10:00 am - 11:30 am || P0984 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18ABCDC3 Using GMOD to Annotate and Distribute Data in the Cloud] ||  Poster
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| Mon. Jan. 14  || 10:00 am - 11:30 am || P0984 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18ABCDC3 Using GMOD to Annotate and Distribute Data in the Cloud]
 +
 
 +
[[Media:Annotating_in_the_cloud_poster.odg|Poster (OpenOffice format)]]
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||  Poster
 
|-
 
|-
 
| Mon. Jan. 14  || 3:00 pm - 4:30 pm  || P0967 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18ABCEC4 WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation] ||  Poster
 
| Mon. Jan. 14  || 3:00 pm - 4:30 pm  || P0967 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18ABCEC4 WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation] ||  Poster
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|}
 
|}
  
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[http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1CA0 The GMOD workshop] on Wednesday January 16th will be held in the Golden West room from 10:20 until 5pm, and has the follow schedule:
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A [[:File:GMOD_Components_at_PAG_XXI.pdf|‎printable PDF of this timetable]] is also available.
 +
 
 +
 
 +
 
 +
==All Day GMOD Workshop==
 +
 
 +
[http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1CA0 The GMOD workshop] on Wednesday January 16th was be held in the Golden West room from 10:20 until 5pm, and had the follow schedule:
  
 
{| class="wikitable"
 
{| class="wikitable"
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|}
 
|}
  
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There will also be many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:
+
==GMOD Consumers and Providers==
  
−
{|  
+
There were also be many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:
 +
 
 +
{| class="wikitable"
 +
! Date
 +
! Time
 +
! ID
 +
! Session title
 +
! Type
 
|-
 
|-
 
| 12 Jan. (Sat.) || 1:30 pm - 3:40 pm || 1500 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BAD Citrus Genome] || Workshops
 
| 12 Jan. (Sat.) || 1:30 pm - 3:40 pm || 1500 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BAD Citrus Genome] || Workshops
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|-
 
|-
 
| 12 Jan. (Sat.) || 10:20 am - 12:30 pm || 1767 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BA9CD DNA Subway: Genomics, DNA Barcoding, and RNA-Seq - Bringing Cutting-Edge Biology into the Classroom] || Workshops
 
| 12 Jan. (Sat.) || 10:20 am - 12:30 pm || 1767 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BA9CD DNA Subway: Genomics, DNA Barcoding, and RNA-Seq - Bringing Cutting-Edge Biology into the Classroom] || Workshops
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|-
 +
! colspan="5" |
 
|-
 
|-
 
| 13 Jan. (Sun.) || 3:50 pm - 6:00 pm || 1509 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1AAB Cotton Genome Initiative] || Workshops
 
| 13 Jan. (Sun.) || 3:50 pm - 6:00 pm || 1509 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1AAB Cotton Genome Initiative] || Workshops
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|-
 
|-
 
| 13 Jan. (Sun.) || 8:00 am - 12:30 pm || 1588 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18A8CF Sugar Cane (ICSB)] || Workshops
 
| 13 Jan. (Sun.) || 8:00 am - 12:30 pm || 1588 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18A8CF Sugar Cane (ICSB)] || Workshops
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|-
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! colspan="5" |
 
|-
 
|-
 
| 14 Jan. (Mon.) || 3:00 pm - 4:30 pm || P0055 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BA0C7 Genome Sequencing and Analysis in Traditional Chinese Medicine Ganoderma sinense] || Posters
 
| 14 Jan. (Mon.) || 3:00 pm - 4:30 pm || P0055 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BA0C7 Genome Sequencing and Analysis in Traditional Chinese Medicine Ganoderma sinense] || Posters
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|-
 
|-
 
| 14 Jan. (Mon.) || 3:00 pm - 4:30 pm || P0985 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18ABCDCC GenSAS: Genome Sequence Annotation Server, a Tool for Online Annotation and Curation] || Posters
 
| 14 Jan. (Mon.) || 3:00 pm - 4:30 pm || P0985 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18ABCDCC GenSAS: Genome Sequence Annotation Server, a Tool for Online Annotation and Curation] || Posters
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|-
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| 14 Jan. (Mon.) || 3:00 pm - 4:30 pm || P1017 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18ABC9C4 Embrapa Bioinformatic Multi-user Laboratory] || Posters
 
|-
 
|-
 
| 14 Jan. (Mon.) || 10:00 am - 11:30 am || P0044 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BA1C8 Sequencing the Genomes of Cultivated Lactuca sativa and its Wild Progenitor, L. serriola] || Posters
 
| 14 Jan. (Mon.) || 10:00 am - 11:30 am || P0044 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BA1C8 Sequencing the Genomes of Cultivated Lactuca sativa and its Wild Progenitor, L. serriola] || Posters
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|-
 
|-
 
| 14 Jan. (Mon.) || 10:00 am - 11:30 am || P0928 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18A8C8C5 A Model Organism Database for Phytozome] || Posters
 
| 14 Jan. (Mon.) || 10:00 am - 11:30 am || P0928 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18A8C8C5 A Model Organism Database for Phytozome] || Posters
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|-
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| 14 Jan. (Mon.) || 10:00 am - 11:30 am || P0934 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18A8C8C3 GnpSeq NGS: a New Tool to Manage NGS Data in URGI's Information System (GnpIS)] || Posters
 
|-
 
|-
 
| 14 Jan. (Mon.) || 10:00 am - 11:30 am || P0948 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18A8C6C5 Bioinformatic Solutions in Forest Genomics: Accessing the TreeGenes Database] || Posters
 
| 14 Jan. (Mon.) || 10:00 am - 11:30 am || P0948 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18A8C6C5 Bioinformatic Solutions in Forest Genomics: Accessing the TreeGenes Database] || Posters
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|-
 
|-
 
| 14 Jan. (Mon.) || 12:50 pm - 3:00 pm || 1701 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18AECD Computer Demos 3 - Crop Databases] || Computer Demonstrations
 
| 14 Jan. (Mon.) || 12:50 pm - 3:00 pm || 1701 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=18AECD Computer Demos 3 - Crop Databases] || Computer Demonstrations
 +
|-
 +
! colspan="5" |
 
|-
 
|-
 
| 15 Jan. (Tue.) || 3:50 pm - 6:00 pm || 1495 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BA9 Cassava Genomics] || Workshops
 
| 15 Jan. (Tue.) || 3:50 pm - 6:00 pm || 1495 || [http://pag13.mapyourshow.com/5_0/sessions/sessiondetails.cfm?ScheduledSessionID=1BA9 Cassava Genomics] || Workshops
 
|}
 
|}
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 +
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==PAG Poster Parade==
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 +
[[User:Scott|Scott]] took photos of most of the posters containing GMOD content or screenshots. [http://www.flickr.com/photos/92269893@N04/sets/72157632530117585/ Check out his gallery on Flickr].
  
 
[[Category:Education and Outreach]]
 
[[Category:Education and Outreach]]
 
[[Category:Conferences]]
 
[[Category:Conferences]]

Latest revision as of 16:10, 15 April 2013

Plant and Animal Genomes conference, aka PAG XXI

GMOD was out in force at the Plant and Animal Genomes (PAG) conference in January 2013. In addition to the day-long workshop on GMOD tools, there were also posters and presentations from many GMOD users, as well as from developers of GMOD tools.

Core GMOD Content

There were a number of items focussed on the tools and services that GMOD provides. These were:

Date Time ID Session Type
Sun. Jan. 13 1:30 pm - 3:40 pm 1530 Generic Genome Browser Workshop
Mon. Jan. 14 10:00 am - 11:30 am P0984 Using GMOD to Annotate and Distribute Data in the Cloud

Poster (OpenOffice format)

Poster
Mon. Jan. 14 3:00 pm - 4:30 pm P0967 WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation Poster
Wed. Jan. 16 10:20 am - 5:00 pm 1537 GMOD Workshop

A ‎printable PDF of this timetable is also available.


All Day GMOD Workshop

The GMOD workshop on Wednesday January 16th was be held in the Golden West room from 10:20 until 5pm, and had the follow schedule:

10:30 AM - 11:10 AM GMOD: A User's Perspective
11:10 AM - 11:50 AM MAKER
11:50 AM - 12:30 PM Tripal: a Toolkit for Construction of Genomic and Genetic Websites Using Chado and Drupal
1:30 PM - 2:10 PM GBrowse_syn: Using the Generic Synteny Browser
2:10 PM - 2:50 PM JBrowse: A Next-Generation Genome Browser
3:05 PM - 3:45 PM WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation
3:45 PM - 4:25 PM Galaxy Update 2013

GMOD Consumers and Providers

There were also be many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:

Date Time ID Session title Type
12 Jan. (Sat.) 1:30 pm - 3:40 pm 1500 Citrus Genome Workshops
12 Jan. (Sat.) 1:30 pm - 3:40 pm 1508 Cool Season Legumes Workshops
12 Jan. (Sat.) 1:30 pm - 3:40 pm 1549 Maize Workshops
12 Jan. (Sat.) 3:50 pm - 6:00 pm 1488 Bioenergy Grass Genomics Workshops
12 Jan. (Sat.) 3:50 pm - 6:00 pm 1531 The Genetic Landscape of Wheat Rusts Workshops
12 Jan. (Sat.) 3:50 pm - 6:00 pm 1659 Next Generation Genome Annotation and Analysis Workshops
12 Jan. (Sat.) 8:00 am - 6:00 pm 1570 Poultry 1 Workshops
12 Jan. (Sat.) 8:00 am - 10:10 am 1596 Applications of Ontologies to Plant and Animal Genomics Workshops
12 Jan. (Sat.) 8:00 am - 12:30 pm 1497 Cattle/Swine Workshops
12 Jan. (Sat.) 8:00 am - 12:30 pm 1560 Pine Genome Reference Sequence Workshops
12 Jan. (Sat.) 10:20 am - 12:30 pm 1484 Arthropod Genomics Workshops
12 Jan. (Sat.) 10:20 am - 12:30 pm 1691 Managing Crop Phenotype Data Workshops
12 Jan. (Sat.) 10:20 am - 12:30 pm 1767 DNA Subway: Genomics, DNA Barcoding, and RNA-Seq - Bringing Cutting-Edge Biology into the Classroom Workshops
13 Jan. (Sun.) 3:50 pm - 6:00 pm 1509 Cotton Genome Initiative Workshops
13 Jan. (Sun.) 3:50 pm - 6:00 pm 1700 Computer Demos 2 - Software Computer Demonstrations
13 Jan. (Sun.) 8:00 am - 12:30 pm 1514 Genome annotation resources at the EBI Workshops
13 Jan. (Sun.) 8:00 am - 12:30 pm 1588 Sugar Cane (ICSB) Workshops
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0055 Genome Sequencing and Analysis in Traditional Chinese Medicine Ganoderma sinense Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0059 Phylogenetic Analyses of Citrus LRR-RLKs Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0223 Genetic Variation Across Australian Bread Wheat Varieties Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0357 QTLs and Comparative Genomics Highlight Candidate Genes for Important Cowpea Traits Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0409 Status of the Draft Potato Ontology Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0621 Whole-Genome Genotyping for Detecting Mutations in the Genes that are Directly Responsible for the Trait Variation Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0763 Analysis of B. taurus and B. indicus Admixture in Uganda as Revealed by the Illumina BovineSNP50 Genotyping BeadChip. Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0953 CottonGen: An Integrated Web-Database for Cotton Genomics, Genetics and Breeding Research Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0957 Annotation of Livestock and Aquaculture species in Ensembl Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0961 Hymenoptera Genome Database: Resources for Annotating and Comparing Hymenopteran Insect Genomes Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P0985 GenSAS: Genome Sequence Annotation Server, a Tool for Online Annotation and Curation Posters
14 Jan. (Mon.) 3:00 pm - 4:30 pm P1017 Embrapa Bioinformatic Multi-user Laboratory Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0044 Sequencing the Genomes of Cultivated Lactuca sativa and its Wild Progenitor, L. serriola Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0058 Genomic Analysis of the Upstream Sequences of Limonene Synthase Genes in Sweet Orange Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0132 Imputation of Microsatellite Alleles from Dense SNP Genotypes for Parentage Verification Across Multiple Bos taurus and Bos indicus breeds Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0326 Using SoyBase Tools to Identify Genes Potentially Involved in Quantitative Traits: the Soybean bZIP1 Transcription Factor and Water Use Efficiency Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0342 Gene Expression Atlas for Common Bean Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0358 Modern Breeding of Cowpea (Vigna unguiculata L. Walp.) in sub-Saharan Africa Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0458 Genomics Resources for North American Hardwoods Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0504 Genome Annotation and Comparison of Two Pacific Rockfishes Differing in Longevity Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0928 A Model Organism Database for Phytozome Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0934 GnpSeq NGS: a New Tool to Manage NGS Data in URGI's Information System (GnpIS) Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0948 Bioinformatic Solutions in Forest Genomics: Accessing the TreeGenes Database Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0952 The Legume Information System 2013 Posters
14 Jan. (Mon.) 10:00 am - 11:30 am P0954 Liverwort Genome Analysis using DDBJ Pipeline and Construction of the Genome Annotation Database Posters
14 Jan. (Mon.) 12:50 pm - 3:00 pm 1701 Computer Demos 3 - Crop Databases Computer Demonstrations
15 Jan. (Tue.) 3:50 pm - 6:00 pm 1495 Cassava Genomics Workshops


PAG Poster Parade

Scott took photos of most of the posters containing GMOD content or screenshots. Check out his gallery on Flickr.

Retrieved from "http://gmod.org/mediawiki/index.php?title=PAG_2013&oldid=23430"