Migrating from GBrowse to JBrowse

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Contents

1 Things to consider
2 prepare-refseqs.pl
3 *-to-json.pl
- 3.1 Mapping out GBrowse to JBrowse configuration
  - 3.1.1 Special note about callbacks
4 Dealing with binary data
5 Where to get help

Things to consider

New or Existing Server
disk space requirements
computing requirements
do you have the original GFF?
dealing with multiple species/data sources

prepare-refseqs.pl

Example command lines for GFF, FASTA and BioDB

*-to-json.pl

Mapping out GBrowse to JBrowse configuration

A table would be good

Special note about callbacks

Dealing with binary data

Where to get help

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