Difference between revisions of "May 2005 GMOD Meeting"

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m (New page: Generic Model Organism Database Construction Set Generic Model Organism Database Meeting May 16-17, 2005 SRI, Menlo Park, CA 9:00am Introductions Scott Cain, GMOD coordinator 9:15 Proje...)
 
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Generic Model Organism Database Construction Set
 
Generic Model Organism Database Construction Set
  
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Generic Model Organism Database Meeting
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==Meeting 6==
  
 
May 16-17, 2005
 
May 16-17, 2005
 
SRI, Menlo Park, CA
 
SRI, Menlo Park, CA
  
−
9:00am Introductions
+
==Agenda==
−
Scott Cain, GMOD coordinator
+
−
9:15 Project updates (short!)
+
−
CMAP
+
−
GBrowse
+
−
SGD
+
−
10:00 Break
+
−
10:15 My trip to France (setting up ParameciumDB)
+
−
Scott Cain
+
−
10:45 Textpresso update
+
−
Eimear Kenney
+
−
11:15 Pathway Tools
+
−
Peter Karp
+
−
12:00 Lunch
+
−
1:15 Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase
+
−
Eric Just
+
−
2:00 chado design, XSL, XML, XORT
+
−
Pinglei Zhou and Chris Mungall
+
−
2:45 Break
+
−
3:00 BioMart and chado
+
−
Arek Kasprzyk
+
−
3:45 Turnkey
+
−
Brian O'Connor
+
−
4:30 Wrap up for the day--items to discuss over dinner
+
−
Scott Cain
+
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Tuesday, May 17
+
  
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9:00 Comparative genome annotation of D. pseudoobscura and its implementation in chado  
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<table cellpadding="6" width="75%">
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Peili Zhang
+
  <tr>
−
9:45 sybil for comparative genomics
+
    <td valign="top" width="15%">9:00am</td>
−
Samuel Angiuoli
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    <td width="85%">Introductions<br>
−
10:30 Break
+
Scott Cain, GMOD coordinator</td>
−
10:45 Apollo Update
+
  </tr>
−
Nomi Harris and Mark Gibson
+
  <tr>
−
10:45 Transposon Insertions and Transposon Constructs editor
+
    <td valign="top" width="15%">9:15</td>
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Frank Smutniak
+
    <td width="85%">Project updates (short!)<br>
−
12:00 Lunch
+
        <ul>
−
1:15 Bio::GMOD and standard URLs
+
            <li>cmap-050516.pdf CMAP
−
Todd Harris
+
            <li>gbrowse-050516.ppt GBrowse
−
2:15 Interaction Browsers (a presentation prepared at the meeting because the topic came up)
+
            <li>sgd-050516.ppt SGD
−
Ben Faga
+
        </ul>
−
2:30 Break
+
    </td>
−
3:00 Das2
+
  </tr>
−
Lincoln Stein
+
  <tr>
−
3:45 Package Management for Bioinformatics Libraries, Applications and Data  
+
    <td valign="top" width="15%">10:00</td>
−
Allen Day
+
    <td width="85%">Break<br>
−
4:30 Wrap up; next meeting, etc (with notes in the presentation from items discussed)  
+
    </td>
−
Lincoln Stein and Scott Cain
+
  </tr>
 +
  <tr>
 +
    <td valign="top" width="15%">10:15</td>
 +
    <td width="85%">cain-050516.ppt My trip to France (setting up ParameciumDB)<br>
 +
    Scott Cain</td>
 +
  </tr>
 +
  <tr>
 +
    <td valign="top" width="15%">10:45</td>
 +
    <td width="85%">kenny-050516.ppt Textpresso update<br>
 +
    Eimear Kenney</td>
 +
  </tr>
 +
  <tr>
 +
    <td valign="top" width="15%">11:15</td>
 +
    <td width="85%">karp-050516.ppt Pathway Tools<br>
 +
    Peter Karp</td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">12:00</td>
 +
    <td width="85%">Lunch<br>
 +
    </td>
 +
  </tr>
 +
  <tr>
 +
    <td valign="top" width="15%">1:15</td>
 +
    <td width="85%">just-050516.ppt Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase<br>
 +
    Eric Just</td>
 +
  </tr>
 +
  <tr>
 +
    <td valign="top" width="15%">2:00</td>
 +
    <td width="85%">mungall-050516.ppt chado design, XSL, XML, XORT<br>Pinglei Zhou and Chris Mungall
 +
    </td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">2:45</td>
 +
    <td width="85%">Break<br>
 +
    </td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">3:00</td>
 +
    <td width="85%">kasprzyk-050516.ppt BioMart and chado<br>
 +
    Arek Kasprzyk</td>
 +
  </tr>
 +
  <tr>
 +
    <td valign="top" width="15%">3:45</td>
 +
    <td width="85%">oconnor-050516.ppt Turnkey<br>
 +
    Brian O'Connor</td>
 +
  </tr>
 +
  <tr>
 +
    <td valign="top" width="15%">4:30</td>
 +
    <td width="85%">Wrap up for the day--items to discuss over dinner <br>
 +
    Scott Cain</td>
 +
  </tr>
 +
 
 +
 
 +
</table>
 +
 
 +
<h4>Tuesday, May 17</h4>
 +
 
 +
<table cellpadding="6" width="75%">
 +
  <tr>
 +
    <td valign="top" width="15%">9:00</td>
 +
    <td width="85%">zhang-050517.ppt Comparative genome annotation of D. pseudoobscura and its  
 +
implementation in chado <br>
 +
    Peili Zhang</td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">9:45</td>
 +
    <td width="85%">sybil for comparative genomics<br>
 +
      Samuel Angiuoli</td>
 +
  </tr>
 +
 
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">10:30</td>
 +
    <td width="85%">Break<br>
 +
    </td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">10:45</td>
 +
    <td width="85%">apollo.ppt">Apollo Update<br>
 +
    Nomi Harris and Mark Gibson</td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">10:45</td>
 +
    <td width="85%">smutniak-050516.ppt Transposon Insertions and Transposon Constructs editor<br>
 +
    Frank Smutniak</td>
 +
  </tr>
 +
 
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">12:00</td>
 +
    <td width="85%">Lunch<br>
 +
    </td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">1:15</td>
 +
    <td width="85%">harris-050517.ppt Bio::GMOD and standard URLs<br>
 +
    Todd Harris</td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">2:15</td>
 +
    <td width="85%">faga_050517.pdf Interaction Browsers (a presentation prepared at the meeting because the topic came up)<br>
 +
    Ben Faga</td>
 +
  </tr>
 +
 
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">2:30</td>
 +
    <td width="85%">Break<br>
 +
    </td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">3:00</td>
 +
    <td width="85%">das.ppt Das2<br>
 +
    Lincoln Stein</td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">3:45</td>
 +
    <td width="85%">day-050517.ppt Package Management for Bioinformatics Libraries, Applications and Data <br>
 +
    Allen Day</td>
 +
  </tr>
 +
 
 +
  <tr>
 +
    <td valign="top" width="15%">4:30</td>
 +
    <td width="85%">what_next.ppt Wrap up; next meeting, etc (with notes in the presentation from items discussed) <br>
 +
    Lincoln Stein and Scott Cain</td>
 +
  </tr>
  
 
[[Category:Meetings]]
 
[[Category:Meetings]]

Revision as of 15:42, 6 April 2007

Generic Model Organism Database Construction Set

Meeting 6

May 16-17, 2005 SRI, Menlo Park, CA

Agenda

9:00am Introductions
Scott Cain, GMOD coordinator
9:15 Project updates (short!)
  • cmap-050516.pdf CMAP
  • gbrowse-050516.ppt GBrowse
  • sgd-050516.ppt SGD
10:00 Break
10:15 cain-050516.ppt My trip to France (setting up ParameciumDB)
Scott Cain
10:45 kenny-050516.ppt Textpresso update
Eimear Kenney
11:15 karp-050516.ppt Pathway Tools
Peter Karp
12:00 Lunch
1:15 just-050516.ppt Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase
Eric Just
2:00 mungall-050516.ppt chado design, XSL, XML, XORT
Pinglei Zhou and Chris Mungall
2:45 Break
3:00 kasprzyk-050516.ppt BioMart and chado
Arek Kasprzyk
3:45 oconnor-050516.ppt Turnkey
Brian O'Connor
4:30 Wrap up for the day--items to discuss over dinner
Scott Cain

Tuesday, May 17

9:00 zhang-050517.ppt Comparative genome annotation of D. pseudoobscura and its

implementation in chado

Peili Zhang
9:45 sybil for comparative genomics
Samuel Angiuoli
10:30 Break
10:45 apollo.ppt">Apollo Update
Nomi Harris and Mark Gibson
10:45 smutniak-050516.ppt Transposon Insertions and Transposon Constructs editor
Frank Smutniak
12:00 Lunch
1:15 harris-050517.ppt Bio::GMOD and standard URLs
Todd Harris
2:15 faga_050517.pdf Interaction Browsers (a presentation prepared at the meeting because the topic came up)
Ben Faga
2:30 Break
3:00 das.ppt Das2
Lincoln Stein
3:45 day-050517.ppt Package Management for Bioinformatics Libraries, Applications and Data
Allen Day
4:30 what_next.ppt Wrap up; next meeting, etc (with notes in the presentation from items discussed)
Lincoln Stein and Scott Cain
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