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Difference between revisions of "ISMB/ECCB 2011"
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− | + | [[File:ISMB2011Logo.png|right|100px|link=http://www.iscb.org/ismbeccb2011|ISMB/ECCB 2011]] | |
[http://www.iscb.org/ismbeccb2011 ISMB/ECCB 2011] will be held July 15-19 in Vienna Austria. Several other events, such at the [http://fgedmeeting.org/ Functional Genomics Data Society Meeting] and [http://casb.ucsd.edu/bioed10/ RECOMB-BE] will be held before and after ISMB. | [http://www.iscb.org/ismbeccb2011 ISMB/ECCB 2011] will be held July 15-19 in Vienna Austria. Several other events, such at the [http://fgedmeeting.org/ Functional Genomics Data Society Meeting] and [http://casb.ucsd.edu/bioed10/ RECOMB-BE] will be held before and after ISMB. | ||
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! rowspan="3" | Monday<br />18 July | ! rowspan="3" | Monday<br />18 July | ||
− | | 12:15-12:40 | + | | 12:15-12:40 |
| [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/technologytrack.php ISMB/ECCB Tech Track] | | [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/technologytrack.php ISMB/ECCB Tech Track] | ||
− | | TT23: Enacting Taverna Workflows through Galaxy, Kostas Karasavvas, NBIC - LUMC | + | | TT23: Enacting Taverna Workflows through Galaxy, Kostas Karasavvas, NBIC - LUMC |
| [[Galaxy]] | | [[Galaxy]] | ||
| [http://www.iscb.org/uploaded/css/82/22437.pdf Abstract] | | [http://www.iscb.org/uploaded/css/82/22437.pdf Abstract] | ||
|- | |- | ||
− | | rowspan="2" | 12:40-14:30 | + | | rowspan="2" | 12:40-14:30 |
| rowspan="2" | [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/posterlist.php ISMB/ECCB Poster Presentations, Odd] | | rowspan="2" | [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/posterlist.php ISMB/ECCB Poster Presentations, Odd] | ||
− | | V7: SymD server: a platform for detecting internally symmetric protein structures, Chin-Hsien (Emily) Tai, ''et al.'', National Cancer Institute | + | | V7: SymD server: a platform for detecting internally symmetric protein structures, Chin-Hsien (Emily) Tai, ''et al.'', National Cancer Institute |
| [[Galaxy]] | | [[Galaxy]] | ||
| | | | ||
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! rowspan="7" | Tuesday<br />19 July | ! rowspan="7" | Tuesday<br />19 July | ||
| 10:45-11:10 | | 10:45-11:10 | ||
− | | [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/technologytrack.php ISMB/ECCB Tech Track] | + | | [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/technologytrack.php ISMB/ECCB Tech Track] |
| TT37: NGS Best Practices through [[Galaxy]]: Cloud-based variant discovery with visual analytics, [[User:DanB|Daniel Blankenberg]], Penn State University | | TT37: NGS Best Practices through [[Galaxy]]: Cloud-based variant discovery with visual analytics, [[User:DanB|Daniel Blankenberg]], Penn State University | ||
+ | | [[Galaxy]] | ||
| [http://www.iscb.org/uploaded/css/82/22442.pdf Abstract] | | [http://www.iscb.org/uploaded/css/82/22442.pdf Abstract] | ||
|- | |- | ||
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|- | |- | ||
| 12:40-14:30 | | 12:40-14:30 | ||
− | | [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/posterlist.php ISMB/ECCB Poster Presentations, Even | + | | [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/posterlist.php ISMB/ECCB Poster Presentations, Even] |
| Z04: CADDSuite: A flexible and open framework and workflow system for computer-aided drug design, Marcel Schumann and Marc Röttig, University of Tuebingen | | Z04: CADDSuite: A flexible and open framework and workflow system for computer-aided drug design, Marcel Schumann and Marc Röttig, University of Tuebingen | ||
| [[Galaxy]] | | [[Galaxy]] | ||
| | | | ||
− | |- | + | |- |
| 14:30-16:25 | | 14:30-16:25 | ||
| [http://www.iscb.org/ismbeccb2011-program/workshops Workshops] | | [http://www.iscb.org/ismbeccb2011-program/workshops Workshops] | ||
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| TT48: Oqtans: A Galaxy-integrated workflow for Quantitative Transcriptome Analysis from NGS data, Géraldine Jean and Sebastian J. Schultheiss, Friedrich Miescher Laboratory of Max Planck Society | | TT48: Oqtans: A Galaxy-integrated workflow for Quantitative Transcriptome Analysis from NGS data, Géraldine Jean and Sebastian J. Schultheiss, Friedrich Miescher Laboratory of Max Planck Society | ||
| [[Galaxy]] | | [[Galaxy]] | ||
− | | [http://www.iscb.org/uploaded/css/82/22477.pdf Abstract] | + | | [http://www.iscb.org/uploaded/css/82/22477.pdf Abstract] |
|- | |- | ||
| 14:30-14:55 | | 14:30-14:55 | ||
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| [http://www.iscb.org/uploaded/css/82/22410.pdf Abstract] | | [http://www.iscb.org/uploaded/css/82/22410.pdf Abstract] | ||
|- | |- | ||
− | | 16:00-16:25 | + | | 16:00-16:25 |
| [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/technologytrack.php ISMB/ECCB Tech Track] | | [https://www.iscb.org/cms_addon/conferences/ismbeccb2011/technologytrack.php ISMB/ECCB Tech Track] | ||
− | | TT59: The [[Galaxy]] Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool, Jeremy Goecks, Emory University | + | | TT59: The [[Galaxy]] Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool, Jeremy Goecks, Emory University |
− | : Note: we are trying to reschedule this to an earlier time. | + | : Note: we are trying to reschedule this to an earlier time. |
| [[Galaxy]] | | [[Galaxy]] | ||
| [http://www.iscb.org/uploaded/css/82/22435.pdf Abstract] | | [http://www.iscb.org/uploaded/css/82/22435.pdf Abstract] |
Latest revision as of 18:42, 17 September 2012
ISMB/ECCB 2011 will be held July 15-19 in Vienna Austria. Several other events, such at the Functional Genomics Data Society Meeting and RECOMB-BE will be held before and after ISMB.
GMOD will once again have a strong presence at these events.
Events, Talks, and Posters
Please add your items to this list as they are scheduled.
Day | Time | Track | Title & Presenter/Organizer | Components | Slides / Poster |
---|---|---|---|---|---|
Fri-Sat 15-16 July |
8:30-18:00 | Satellites | BOSC: The 12th Annual Bioinformatics Open Source Conference | ||
|
Galaxy | ||||
|
InterMine | ||||
|
BioMart | ||||
|
Galaxy | ||||
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WebApollo | ||||
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Galaxy | ||||
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|
GMOD Components | ||||
Sunday 17 July |
10:45-12:40 | ISMB/ECCB Workshops | W1: Bioinformatics Core Facilities.
Includes a talk by Brad Chapman on their use of Galaxy at the Harvard School of Public Health |
Galaxy | |
Monday 18 July |
12:15-12:40 | ISMB/ECCB Tech Track | TT23: Enacting Taverna Workflows through Galaxy, Kostas Karasavvas, NBIC - LUMC | Galaxy | Abstract |
12:40-14:30 | ISMB/ECCB Poster Presentations, Odd | V7: SymD server: a platform for detecting internally symmetric protein structures, Chin-Hsien (Emily) Tai, et al., National Cancer Institute | Galaxy | ||
J43: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts, Philipp Drewe, et al. Friedrich Miescher Laboratory of the Max Planck Society | Galaxy | ||||
Tuesday 19 July |
10:45-11:10 | ISMB/ECCB Tech Track | TT37: NGS Best Practices through Galaxy: Cloud-based variant discovery with visual analytics, Daniel Blankenberg, Penn State University | Galaxy | Abstract |
12:15-12:40 | ISMB/ECCB Proceedings | PT40: From Sets to Graphs: Towards a Realistic Enrichment Analysis of Transcriptomic Systems, Ludwig Geistlinger, LMU München | Galaxy | ||
12:40-14:30 | ISMB/ECCB Poster Presentations, Even | Z04: CADDSuite: A flexible and open framework and workflow system for computer-aided drug design, Marcel Schumann and Marc Röttig, University of Tuebingen | Galaxy | ||
14:30-16:25 | Workshops | W6: Genomics for Non-Model Organisms, Dave Clements
|
Galaxy | ||
14:30-14:55 | ISMB/ECCB Tech Track | TT48: Oqtans: A Galaxy-integrated workflow for Quantitative Transcriptome Analysis from NGS data, Géraldine Jean and Sebastian J. Schultheiss, Friedrich Miescher Laboratory of Max Planck Society | Galaxy | Abstract | |
14:30-14:55 | ISMB/ECCB Tech Track | TT24: EMBOSS: New developments and extended data access, Peter Rice, European Bioinformatics Institute | Galaxy | Abstract | |
16:00-16:25 | ISMB/ECCB Tech Track | TT59: The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool, Jeremy Goecks, Emory University
|
Galaxy | Abstract |