Difference between revisions of "Galaxy"
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[http://main.g2.bx.psu.edu/ Galaxy] is a framework of interactive tools for [[:Category:Comparative Genomics|comparative genomics]], targeting both experimental and computational biologists. | [http://main.g2.bx.psu.edu/ Galaxy] is a framework of interactive tools for [[:Category:Comparative Genomics|comparative genomics]], targeting both experimental and computational biologists. | ||
| − | == | + | == 2011 Galaxy Community Conference == |
| − | The Galaxy | + | {{ImageLeft|GCC2011Logo.png|2011 Galaxy Community Conference|300|http://galaxy.psu.edu/gcc2011/}} |
| + | The [http://galaxy.psu.edu/gcc2011/ 2011 Galaxy Community Conference] will be held 25-26 May, at the Conference Centre De Werelt in Lunteren, The Netherlands. This year the conference is co-organized by the [http://www.nbic.nl/ Netherlands Bioinformatics Centre (NBIC)]. The conference features [http://galaxy.psu.edu/gcc2011/Programme.html two full days] of presentations and discussion on extending Galaxy to use new tools and data sources, deploying Galaxy at your organization, and best practices for using Galaxy to further your research. If you have or intend to deploy Galaxy, or if you are a tool developer or a data provider then you are strongly encouraged to attend. | ||
| + | === Deadlines === | ||
| + | {| class="wikitable" | ||
| + | | February 28 | ||
| + | | [http://galaxy.psu.edu/gcc2011/Abstracts.html Abstract Submission] Deadline | ||
| + | |- | ||
| + | | April 24 | ||
| + | | [http://galaxy.psu.edu/gcc2011/Register.html Early Registration] Deadline | ||
| + | |} | ||
| + | |||
| + | |||
| + | ==Demo & Screencasts == | ||
| + | |||
| + | Try the [http://usegalaxy.org/ public Galaxy server]. You can create a login and save your work, or use it anonymously. Short [http://main.g2.bx.psu.edu/screencast screencasts] on how to use Galaxy for several example tasks are also available. | ||
==Requirements== | ==Requirements== | ||
Revision as of 18:36, 2 February 2011
__NOTITLE__
- Mature release
- Active development
- Active support
- Project Home
- Download
- Mailing Lists
- Public Server
- Admin Tutorial
- Galaxy 101
- Wiki
- Screencasts
- 2012 Conf.Template:ComponentBoxEventsHeader
Feb 22 2011
Spring Training
March 5-12
May 25-26
Galaxy is a framework of interactive tools for comparative genomics, targeting both experimental and computational biologists.
Contents
2011 Galaxy Community Conference
The 2011 Galaxy Community Conference will be held 25-26 May, at the Conference Centre De Werelt in Lunteren, The Netherlands. This year the conference is co-organized by the Netherlands Bioinformatics Centre (NBIC). The conference features two full days of presentations and discussion on extending Galaxy to use new tools and data sources, deploying Galaxy at your organization, and best practices for using Galaxy to further your research. If you have or intend to deploy Galaxy, or if you are a tool developer or a data provider then you are strongly encouraged to attend.
Deadlines
| February 28 | Abstract Submission Deadline |
| April 24 | Early Registration Deadline |
Demo & Screencasts
Try the public Galaxy server. You can create a login and save your work, or use it anonymously. Short screencasts on how to use Galaxy for several example tasks are also available.
Requirements
- Python version 2.4 or higher
- Mac OS X currently requires Universal "Fat" Python 2.4 (the Python 2.4 build officially supported by Apple) from http://macpython.org/ (direct link)
- Galaxy runs fine in most Posix environments. It is not currently supported on Windows platforms, but necessary Python eggs can be built by those desiring to host it on Windows.
Documentation
- Most Galaxy documentation is in the Galaxy Wiki.
- Galaxy: A platform for interactive large-scale genome analysis, by Belinda Giardine, Cathy Riemer, Ross C. Hardison, Richard Burhans, Laura Elnitski, Prachi Shah, Yi Zhang, Daniel Blankenberg, Istvan Albert, James Taylor, Webb Miller, W. James Kent and Anton Nekrutenko, Genome Res. 15:1451-1455, 2005
Mailing Lists
| Mailing List Link | Description | Archive(s) | |
|---|---|---|---|
| Galaxy (Search everything) |
galaxy-announce | Announcements of interest to the Galaxy community. Low volume and moderated. | Nabble, Mailman |
| Galaxy Help | General questions and discussion about using Galaxy. Also used for announcements relevant to the Galaxy user community. This is not a mailing list, but an online forum, based on the popular Discourse platform. High volume. | ||
| galaxy-dev | Discussion and questions regarding local installations and development of Galaxy. Medium volume. | Nabble, Mailman |
Downloads
Galaxy aims to be a zero configuration entirely self-contained system that provides a lightweight webserver, an embedded database and a multi-threaded job manager. All tools (and their parameters) can be specified via simple XML based configuration files. Galaxy download and installation information is located here.
