Difference between revisions of "GMOD Malaysia 2014/Intermine Tutorial"
From GMOD
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(→The Web Interface) |
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Tasks: | Tasks: | ||
* Find the templates section | * Find the templates section | ||
| + | * What genes are associates with "Homeo-" domains? | ||
* How many templates are good matches for "protein domain"? | * How many templates are good matches for "protein domain"? | ||
* Can you find the protein domains for the gene "mad"? | * Can you find the protein domains for the gene "mad"? | ||
* Can you find the protein domains for genes expressed in the Fly ovary? How many are there? | * Can you find the protein domains for genes expressed in the Fly ovary? How many are there? | ||
| + | |||
| + | === Using the Report Pages === | ||
| + | |||
| + | Report pages allow you to get an overview of the diverse data available for individual items. | ||
| + | |||
| + | === Using the Results Tables === | ||
| + | |||
| + | The results tables allow you to start exploring once you have begun to query the data. | ||
| + | |||
| + | === Using Lists === | ||
| + | |||
| + | Lists allow you to store and re-use sets of items. | ||
Revision as of 18:11, 27 February 2014
Contents
The Web Interface
This section focusses on the features of the graphical web interface.
All these tasks will look at FlyMine.
Search
The most basic search interface - the "quick-search" allows unstructured access to data in the system. Information is provided about what type of data is returned, to help narrow the search.
Tasks:
- How many hits are returned for "eve", "alzheimer"?
- Which fly genes match "alzheimer"?
Templates
Templates provide a more targeted search, which can be more powerful once you know what you are looking for.
Tasks:
- Find the templates section
- What genes are associates with "Homeo-" domains?
- How many templates are good matches for "protein domain"?
- Can you find the protein domains for the gene "mad"?
- Can you find the protein domains for genes expressed in the Fly ovary? How many are there?
Using the Report Pages
Report pages allow you to get an overview of the diverse data available for individual items.
Using the Results Tables
The results tables allow you to start exploring once you have begun to query the data.
Using Lists
Lists allow you to store and re-use sets of items.
