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Difference between revisions of "Zheng's installation notes"
From GMOD
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==before you start== | ==before you start== | ||
| − | you can be a superuser or you can sudo to install packages; | + | *you can be a superuser or you can sudo to install packages; |
| − | + | *you have yum installed in your path; | |
| − | you have yum installed in your path; | + | *you have cpan installed in your path; |
| − | + | *you have cvs installed in your path; | |
| − | you have cpan installed in your path; | + | *you have read [http://gmod.cvs.sourceforge.net/*checkout*/gmod/schema/chado/INSTALL the chado INSTALL document] |
| − | + | ||
| − | you have cvs installed in your path; | + | |
| − | + | ||
| − | you have read [http://gmod.cvs.sourceforge.net/*checkout*/gmod/schema/chado/INSTALL the chado INSTALL document] | + | |
==get chado schema from cvs== | ==get chado schema from cvs== | ||
Revision as of 22:26, 19 March 2007
Back to Chado New Users
Contents
general information
There suppose to be an easy way and a hard way to install Chado database on Fedora:
the easy way: use an existing rpm package. I have not tried it. but you can find information at installation using an RPM
the hard way: install by source. But yum makes it easier. The following is my note on installation of Chado on Fedora 6.
before you start
- you can be a superuser or you can sudo to install packages;
- you have yum installed in your path;
- you have cpan installed in your path;
- you have cvs installed in your path;
- you have read the chado INSTALL document
get chado schema from cvs
see Chado From CVS, issue cvs command at my home directory.
install prerequisites
install postgresql
- install both client and server by yum.
- make server run
- create PL language, template, several roles
install bioperl live
[zha@localhost ~]$ sudo cpan Password: cpan[1]> install S/SE/SENDU/bioperl-1.5.2_102
install go-dev
download and unpack the go-dev package since need to set the GO_ROOT environment variable. Although right now only a perl parser module for GO is needed.
- in .bash_profile add line
export GO_ROOT="$HOME/go-dev"
- install GO::Parser
[zha@localhost ~]$ sudo cpan Password: cpan[1]> install GO::Parser
