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Difference between revisions of "Zheng's installation notes"
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There suppose to be an easy way and a hard way to install Chado database on Fedora: | There suppose to be an easy way and a hard way to install Chado database on Fedora: | ||
− | + | *the easy way: use an existing rpm package. I have not tried it. but you can find information at [[Chado_-_Getting_Started#Installation_using_an_RPM|installation using an RPM]] | |
− | the easy way: use an existing rpm package. I have not tried it. but you can find information at [[Chado_-_Getting_Started#Installation_using_an_RPM|installation using an RPM]] | + | *the hard way: install by source. But [http://en.wikipedia.org/wiki/Yellow_dog_Updater,_Modified yum] makes it easier. The following is my note on installation of Chado on Fedora 6. |
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− | the hard way: install by source. But [http://en.wikipedia.org/wiki/Yellow_dog_Updater,_Modified yum] makes it easier. The following is my note on installation of Chado on Fedora 6. | + | |
==before you start== | ==before you start== |
Revision as of 22:27, 19 March 2007
Back to Chado New Users
Contents
general information
There suppose to be an easy way and a hard way to install Chado database on Fedora:
- the easy way: use an existing rpm package. I have not tried it. but you can find information at installation using an RPM
- the hard way: install by source. But yum makes it easier. The following is my note on installation of Chado on Fedora 6.
before you start
- you can be a superuser or you can sudo to install packages;
- you have yum installed in your path;
- you have cpan installed in your path;
- you have cvs installed in your path;
- you have read the chado INSTALL document
get chado schema from cvs
see Chado From CVS, issue cvs command at my home directory.
install prerequisites
install postgresql
- install both client and server by yum.
- make server run
- create PL language, template, several roles
install bioperl live
[zha@localhost ~]$ sudo cpan Password: cpan[1]> install S/SE/SENDU/bioperl-1.5.2_102
install go-dev
download and unpack the go-dev package since need to set the GO_ROOT environment variable. Although right now only a perl parser module for GO is needed.
- in .bash_profile add line
export GO_ROOT="$HOME/go-dev"
- install GO::Parser
[zha@localhost ~]$ sudo cpan Password: cpan[1]> install GO::Parser