NOTE: We are working on migrating this site away from MediaWiki, so editing pages will be disabled for now.

Edit Tool data: DIYA

Jump to: navigation, search

You do not have permission to edit this page, for the following reason:

You are not allowed to execute the action you have requested.

The Basics[edit]

Name:
Full name if name is an abbreviation, acronym, etc.

Status:
Current development:
Support status:
Tool classification or features:
Platform: If the tool

Brief description:
Open source:
Software licence:
Type of input data e.g. genomic sequence; taxonomic group; protein identifier; anatomy ontology, etc.

Input formats:
Output formats:
Programming language(s)
Intended usage
First public release
Use standard tool display template? yes


Files[edit]

Logo (file name) enter the name of the file on the GMOD wiki, e.g. CoolAppLogo.png

Screenshot(s)

Contact details[edit]

Contact email
Mailing list(s)


Links[edit]

The majority of links related to the tool should be added using the interface at the bottom of the page.

Download text If there is not a simple download URL for downloading the tool, please enter download instructions here. Download URLs can be entered in the 'Links' section below.

Download source code text If there is not a simple download URL for downloading the source code for the tool, please enter download instructions here. URLs can be entered in the 'Links' section below.


Materials[edit]

Publications
Presentations
Tutorials


Extra Textual Goodies[edit]

Any introductory text for users
Software prerequisites
Installation
Configuration
Documentation
Development team
Development status
Download/usage tracking
Logo info
See also Any extra information, links, etc.

Extra items for component box


Free text:

Links

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

Interoperable components
Type of interaction

Component

Upload a related file

Cancel

Retrieved from "http://gmod.org/wiki/DIYA"
Facts about "DIYA"RDF feed
Available on platformlinux +, unix + and os x +
Date published2009 +
Has DOI10.1093/bioinformatics/btp097 +
Has PMCIDPMC2660880 +
Has PMID19254921 +
Has URLhttps://github.com/bioteam/DIYA +
Has authorStewart AC +, Osborne B + and Read TD +
Has descriptionDIYA (Do-It-Yourself Annotator) is a modul … DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline framework, written in Perl, used for the rapid annotation of microbial genome sequences. The software is currently used to take nucleotide sequence contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence.

Status[edit]

Active development of DIYA is currently on hiatus, pending the hiring of additional people to work on it. Andrew Stewart, one of DIYA's developers also has plans to convert the DIYA modules into a series of Galaxy modules.dules into a series of Galaxy modules. +
Has development statusinactive +
Has full nameDo-It-Yourself Annotator +
Has input formatFASTA +, GFF + and Genbank +
Has licenceGnu GPL +
Has logoDIYALogo.png +
Has output formatFASTA +, GFF + and Genbank +
Has publication detailsBioinformatics (Oxford, England) 25: 962-3 +
Has software maturity statusbeta release +
Has support statusinactive +
Has titleDIYA: a bacterial annotation pipeline for any genomics lab. +
Has topicDIYA +
Interaction typeprovides input for +
InteractorDIYA +
Interacts withGBrowse +
Is open sourceYes +
Link typedownload + and website +
Published inBioinformatics (Oxford, England) +
Release date2008 +
Tool functionality or classificationGenome annotation +, Workflow management + and Tool integration +
Written in languagePerl +
Has subobjectThis property is a special property in this wiki.DIYA#https://github.com/bioteam/DIYA + and DIYA +