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  • ...operating procedures and data models that would form the basis of a set of generic components for MOD building. ...tic constructs and clones; and lastly to provide a common nomenclature for gene symbols, anatomic terms and other elements of the scientific vocabulary. By
    26 KB (3,975 words) - 05:03, 28 January 2008
  • ....mbl.edu/cgi-bin/site/emiliania04 ''Emiliania huxleyi'' Serial Analysis of Gene Expression] database. We even find GMOD databases dedicated to collections What the user will see is one or more applications. These may be a set of web pages or a Java application. The choice of applications is dictated by the nature
    34 KB (5,526 words) - 19:56, 7 October 2013
  • * A database that is generic enough to use for any organism ...currently the best source of documentation for Chado. Here are more useful pages in the Wiki:
    14 KB (2,071 words) - 22:45, 11 January 2019
  • ...eloped completely different modules for community, literature, anatomy and gene expression. If there is a PATO compatible Chado Phenotype solution we'd pr * gene predictions
    54 KB (8,190 words) - 23:34, 8 October 2012
  • ...eloped completely different modules for community, literature, anatomy and gene expression. If there is a PATO compatible Chado Phenotype solution we'd pr * gene predictions
    50 KB (7,599 words) - 16:26, 2 September 2018
  • ...ultaneously. Although created for applications in biology, N-Browse uses a generic database schema that can be adapted to network representations in any knowl ...e. Links to the N-Browse GUI at WormBase are available on the Gene Summary pages. TAIR's N-Browse search page can be accessed via the Tools menu on the TAI
    6 KB (920 words) - 16:57, 30 September 2010
  • ...llowing styles to defined in a single place and then referred to from many pages. === Gene Finder Format ===
    14 KB (2,081 words) - 02:50, 14 March 2014
  • This means that if a user types "[[Generic Genome Browser]]" in the "Go/Search" box and you have a redirect defined fo ...the "create this page" link. In our example, you would enter/search for "Generic Genome Browser".
    16 KB (2,420 words) - 23:18, 8 November 2013
  • This document provides information on configuring version 1 of the [[GBrowse|Generic Genome Browser (GBrowse)]], part of the [[Main Page|GMOD Project]]. For ver ....gb file. I would copy & paste specific sections (i.e. section for CDS or gene, etc. - any type can be altered) and then change the type to some key word
    79 KB (12,563 words) - 16:45, 15 August 2011
  • ...neric, lightweight pipeline framework which was initially built to produce gene predictions. DIYA is becoming part of GMOD. ** Good enough for real time user interaction, e.g., <1s for single gene search, 1-4s for multigene search (unions)
    59 KB (8,741 words) - 19:37, 4 September 2013
  • =Common Gene Page Rationale= Model organism/genome databases (MODs) produce gene pages of similar
    7 KB (1,051 words) - 19:24, 4 September 2013
  • ...sary#Perl|Perl]] class that provides a render_xml method to crete [[Common Gene Page]] [[Glossary#XML|XML]], but does not fetch the data. In order to effe ...be seen by clicking on the "Download GMOD XML" link on any of there locus pages; for example, this one:
    6 KB (755 words) - 01:16, 19 August 2009
  • ...the [http://packages.debian.org/source/sid/gbrowse GBrowse Debian package pages.] ...e [http://packages.debian.org/source/wheezy/gbrowse GBrowse Debian package pages.]
    101 KB (15,507 words) - 04:44, 9 January 2014
  • |[[Bio GMOD GenericGenePage|Generic Gene Page XML]] ...icGenePage.ppt|PPT]], [[Media:Jan2009GenreicGenePage.pdf|PDF]], [[#Generic Gene Page XML|Summary]], [[#Data Sharing|Discussion]]
    50 KB (7,612 words) - 18:53, 8 October 2012
  • ...s one or more computers, you can spread out the work of generating GBrowse pages, thereby achieving improved performance. A slave can be attached to a parti % cd Generic-Genome-Browser
    16 KB (2,473 words) - 12:08, 12 October 2011
  • At present, this API only covers querying and retrieving information for the gene data class. == Language Implementation Pages ==
    25 KB (3,166 words) - 23:02, 15 August 2013
  • ...file format for storing genomic features in a text file. GFF stands for ''Generic Feature Format''. GFF files are plain text, 9 column, tab-delimited files. ...mmonly CDS coding segments and UTRs. This example shows how to represent a gene named "EDEN" which has three alternatively-spliced mRNA transcripts:
    16 KB (2,336 words) - 19:49, 10 September 2012
  • ...file format for storing genomic features in a text file. GFF stands for ''Generic Feature Format''. GFF files are plain text, 9 column, tab-delimited files. ...mmonly CDS coding segments and UTRs. This example shows how to represent a gene named "EDEN" which has three alternatively-spliced mRNA transcripts:
    16 KB (2,387 words) - 22:13, 11 February 2014
  • =The Generic Synteny Browser= ...w to install, configure and use GBrowse_syn. To get started, browse these pages:
    19 KB (2,507 words) - 18:53, 8 October 2012
  • | [[:bp:Module:Bio::Graphics::Glyph::generic|generic]] | a gene model
    6 KB (919 words) - 18:49, 4 September 2013
  • ...re.lifesci.dundee.ac.uk/staff/jason_swedlow.html Wellcome Trust Centre for Gene Regulation and Expression], [http://www.dundee.ac.uk/ University of Dundee] ...r value to the GMOD community as many GMOD members expand into phenotypes, gene expression, fate mapping, natural diversity, and other image-intensive ques
    100 KB (14,725 words) - 17:31, 30 November 2012
  • ...https://gmod.svn.sourceforge.net/svnroot/gmod/Generic-Genome-Browser/trunk Generic-Genome-Browser</span> $ <span class="enter">cd Generic-Genome-Browser</span>
    21 KB (2,890 words) - 22:24, 3 October 2012
  • feature = gene:ensembl glyph = gene
    23 KB (3,325 words) - 20:52, 3 October 2012
  • ...file format for storing genomic features in a text file. GFF stands for ''Generic Feature Format''. GFF files are plain text, 9 column, tab-delimited files. ...mmonly CDS coding segments and UTRs. This example shows how to represent a gene named "EDEN" which has three alternatively-spliced mRNA transcripts:
    16 KB (2,350 words) - 20:25, 12 July 2016
  • ...acks can be used to visualize localized annotations on a sequence, such as gene models, transcript alignments, SNPs and so forth. ...nsidered "top-level" for this track. For example, if you have a track with gene->mRNA->CDS features, but for some reason want to only display the mRNA feat
    185 KB (26,471 words) - 15:29, 6 July 2018
  • ...ook for both <tt>index.php</tt> and <tt>index.html</tt> files when serving pages. ...lt with Drupal: Page and Story. Here is where a user can add simple new pages to the website without knowledge of HTML or CSS. Click the '''Page''' cont
    131 KB (21,091 words) - 21:53, 2 January 2014
  • ...details''' that gives this details box the styling seen on all Tripal node pages. <li><a href="http://www.eol.org/pages/582206" target="_blank">Encylopeida of Life</a></li>
    70 KB (10,442 words) - 16:45, 14 October 2013
  • ...file format for storing genomic features in a text file. GFF stands for ''Generic Feature Format''. GFF files are plain text, 9 column, tab-delimited files. ...mmonly CDS coding segments and UTRs. This example shows how to represent a gene named "EDEN" which has three alternatively-spliced mRNA transcripts:
    16 KB (2,352 words) - 21:54, 11 September 2012
  • The dataset we uploaded is a generic tabular data file (dumped out of the UCSC browser, not in any particular fe ==== 4. Get Gene Annotations from UCSC ====
    32 KB (4,846 words) - 21:16, 9 October 2012
  • ...eloped completely different modules for community, literature, anatomy and gene expression. If there is a PATO compatible Chado Phenotype solution we'd pr * gene predictions
    53 KB (8,083 words) - 20:52, 27 August 2013
  • ...https://gmod.svn.sourceforge.net/svnroot/gmod/Generic-Genome-Browser/trunk Generic-Genome-Browser</span> $ <span class="enter">cd Generic-Genome-Browser</span>
    20 KB (2,712 words) - 22:39, 13 February 2013
  • The dataset we uploaded is a generic tabular data file (dumped out of the UCSC browser, not in any particular fe === 4. Get Gene Annotations from UCSC ===
    38 KB (5,631 words) - 23:56, 13 February 2013
  • ...file format for storing genomic features in a text file. GFF stands for ''Generic Feature Format''. GFF files are plain text, 9 column, tab-delimited files. ...mmonly CDS coding segments and UTRs. This example shows how to represent a gene named "EDEN" which has three alternatively-spliced mRNA transcripts:
    16 KB (2,345 words) - 00:23, 14 February 2013
  • ...eloped completely different modules for community, literature, anatomy and gene expression. If there is a PATO compatible Chado Phenotype solution we'd pr * gene predictions
    50 KB (7,599 words) - 12:36, 20 May 2014
  • ...eloped completely different modules for community, literature, anatomy and gene expression. If there is a PATO compatible Chado Phenotype solution we'd pr * gene predictions
    50 KB (7,595 words) - 12:53, 20 May 2014
  • feature = gene:ensembl glyph = gene
    20 KB (2,714 words) - 10:44, 22 May 2014
  • [[GFF]] (Generic Feature Format) is a very commonly used text format for describing features ...es a URL pattern that you can use to link genomic features to specific web pages.
    18 KB (2,519 words) - 23:33, 19 October 2015
  • ;'''[http://www.gmod.org Generic Model Organism Database (GMOD)]''' : An open source project to develop a co ;'''[http://gmod.org/wiki/GBrowse GBrowse]''': The Generic Genome Browser (GBrowse) is a web application for searching and displaying
    17 KB (2,555 words) - 19:59, 12 February 2014
  • ...ook for both <tt>index.php</tt> and <tt>index.html</tt> files when serving pages. ...lt with Drupal: Page and Story. Here is where a user can add simple new pages to the website without knowledge of HTML or CSS. Click the '''Page''' cont
    131 KB (21,099 words) - 00:18, 20 February 2014
  • ...eloped completely different modules for community, literature, anatomy and gene expression. If there is a PATO compatible Chado Phenotype solution we'd pr * gene predictions
    51 KB (7,657 words) - 00:19, 20 February 2014
  • ...file format for storing genomic features in a text file. GFF stands for ''Generic Feature Format''. GFF files are plain text, 9 column, tab-delimited files. ...mmonly CDS coding segments and UTRs. This example shows how to represent a gene named "EDEN" which has three alternatively-spliced mRNA transcripts:
    16 KB (2,318 words) - 04:56, 19 May 2014
  • [[GFF]] (Generic Feature Format) is a very commonly used text format for describing features ...es a URL pattern that you can use to link genomic features to specific web pages.
    19 KB (2,697 words) - 06:25, 13 January 2016
  • feature = gene:ensembl glyph = gene
    20 KB (2,751 words) - 19:05, 22 May 2014
  • [[GFF]] (Generic Feature Format) is a very commonly used text format for describing features ...es a URL pattern that you can use to link genomic features to specific web pages.
    20 KB (2,903 words) - 19:59, 16 October 2016
  • [[GFF]] (Generic Feature Format) is a very commonly used text format for describing features ...es a URL pattern that you can use to link genomic features to specific web pages.
    20 KB (2,867 words) - 19:38, 15 January 2017
  • [[GFF]] (Generic Feature Format) is a very commonly used text format for describing features ...es a URL pattern that you can use to link genomic features to specific web pages.
    21 KB (2,962 words) - 05:00, 14 January 2018
  • [[GFF]] (Generic Feature Format) is a very commonly used text format for describing features ...es a URL pattern that you can use to link genomic features to specific web pages.
    22 KB (3,098 words) - 21:05, 13 January 2019

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