| Available on platform
|
web +
|
| Date published
|
2009 +
, 2008 +
, 2007 +
, 2006 +
, 2002 +
|
| Has DOI
|
10.1002/0471250953.bi0909s28 +
, 10.1186/1471-2148-9-221 +
, 10.1016/j.tube.2009.07.005 +
, 10.1089/zeb.2008.0531 +
, 10.1002/0471250953.bi0909s17 +
, 10.1371/journal.pone.0000322 +
, 10.1186/1751-0473-1-4 +
, 10.1101/gr.403602 +
|
| Has PMCID
|
PMC2755008 +
, PMC1829191 +
, PMC1636335 +
, PMC187535 +
|
| Has PMID
|
19957275 +
, 19732458 +
, 19683474 +
, 18554176 +
, 18428797 +
, 17389913 +
, 17147784 +
, 12368253 +
|
| Has URL
|
http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ +
, https://github.com/GMOD/GBrowse +
, http://gbrowse.org +
, http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ +
, http://flybase.org/cgi-bin/gbrowse/dmel +
, http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse +
|
| Has author
|
Donlin MJ +
, Cheng F +
, Chen W +
, Richards E +
, Deng L +
, Zeng C +
, Bhardwaj A +
, Bhartiya D +
, Kumar N +
, Open Source Drug Discovery Consortium +
, Scaria V +
, Meli R +
, Prasad A +
, Patowary A +
, Lalwani MK +
, Maini J +
, Sharma M +
, Singh AR +
, Kumar G +
, Jadhav V +
, Sivasubbu S +
, Schacherer J +
, Ruderfer DM +
, Gresham D +
, Dolinski K +
, Botstein D +
, Kruglyak L +
, Wilkinson M +
, Stein LD +
, Mungall C +
, Shu S +
, Caudy M +
, Mangone M +
, Day A +
, Nickerson E +
, Stajich JE +
, Harris TW +
, Arva A +
, Lewis S +
|
| Has description
|
GBrowse is a combination of database and i … GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. Features include:
* Simultaneous bird's eye and detailed views of the genome.
* Scroll, zoom, center.
* Use a variety of [[GBrowse Configuration HOWTO#Glyphs and Glyph Options|premade glyphs]] or create your own.
* Attach arbitrary URLs to any annotation.
* Order and appearance of tracks are customizable by administrator and end-user.
* Search by annotation ID, name, or comment.
* Supports third party annotation using [[GFF]] formats.
* Settings persist across sessions.
* DNA and [[GFF]] dumps.
* Connectivity to different databases, including [[BioSQL]] and [[Chado]].
* Multi-language support.
* Third-party feature loading.
* Customizable [[GBrowse Plugins|plug-in]] architecture (e.g. run [[wp:BLAST|BLAST]], dump & import many formats, find oligonucleotides, [[PrimerDesigner.pm|design primers]], create restriction maps, edit features)
Note that the information on this page refers to GBrowse 2; GBrowse 1.x is recommended only for applications where legacy browser support is required and a single database is used.is required and a single database is used. +
|
| Has development status
|
active +
|
| Has full name
|
Generic Genome Browser +
|
| Has input format
|
GFF3 +
, GFF2 +
|
| Has licence
|
GPL2 +
, Artistic License +
|
| Has logo
|
GBrowseLogo.png +
|
| Has publication details
|
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] Chapter 9: Unit 9.9 +
, BMC evolutionary biology 9: 221 +
, Tuberculosis (Edinburgh, Scotland) 89: 386-7 +
, Zebrafish 5: 125-30 +
, PloS one 2: e322 +
, Source code for biology and medicine 1: 4 +
, Genome research 12: 1599-610 +
|
| Has software maturity status
|
mature +
|
| Has support status
|
active +
|
| Has title
|
WormBase +
, FlyBase +
, HapMap +
, Using the Generic Genome Browser (GBrowse). +
, SNP@Evolution: a hierarchical database of positive selection on the human genome. +
, TBrowse: an integrative genomics map of Mycobacterium tuberculosis. +
, FishMap: a community resource for zebrafish genomics. +
, Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains. +
, Gbrowse Moby: a Web-based browser for BioMoby Services. +
, The generic genome browser: a building block for a model organism system database. +
|
| Has topic
|
GBrowse +
|
| Is open source
|
Yes +
|
| Link type
|
download +
, source code +
, website +
, wild URL +
|
| Published in
|
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] +
, BMC evolutionary biology +
, Tuberculosis (Edinburgh, Scotland) +
, Zebrafish +
, PloS one +
, Source code for biology and medicine +
, Genome research +
|
| Release date
|
1 January 2001 +
|
| Tool functionality or classification
|
Genome Visualization & Editing +
|
| Written in language
|
Perl +
|
| Has queryThis property is a special property in this wiki.
|
GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
|
| Has improper value forThis property is a special property in this wiki.
|
Has title +
, Has description +
|
| Categories |
GBrowse +
, GMOD Components +
, GMOD Component +
, SemanticLink +
|
| Modification dateThis property is a special property in this wiki.
|
2 December 2013 17:18:55 +
|
| Has subobjectThis property is a special property in this wiki.
|
GBrowse#http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ +
, GBrowse#https://github.com/GMOD/GBrowse +
, GBrowse#http://gbrowse.org +
, GBrowse#http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ +
, GBrowse#http://flybase.org/cgi-bin/gbrowse/dmel +
, GBrowse#http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse +
|
