Available on platform
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web +
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Date published
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2009 +
, 2008 +
, 2007 +
, 2006 +
, 2002 +
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Has DOI
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10.1002/0471250953.bi0909s28 +
, 10.1186/1471-2148-9-221 +
, 10.1016/j.tube.2009.07.005 +
, 10.1089/zeb.2008.0531 +
, 10.1002/0471250953.bi0909s17 +
, 10.1371/journal.pone.0000322 +
, 10.1186/1751-0473-1-4 +
, 10.1101/gr.403602 +
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Has PMCID
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PMC2755008 +
, PMC1829191 +
, PMC1636335 +
, PMC187535 +
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Has PMID
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19957275 +
, 19732458 +
, 19683474 +
, 18554176 +
, 18428797 +
, 17389913 +
, 17147784 +
, 12368253 +
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Has URL
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http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ +
, https://github.com/GMOD/GBrowse +
, http://gbrowse.org +
, http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ +
, http://flybase.org/cgi-bin/gbrowse/dmel +
, http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse +
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Has author
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Donlin MJ +
, Cheng F +
, Chen W +
, Richards E +
, Deng L +
, Zeng C +
, Bhardwaj A +
, Bhartiya D +
, Kumar N +
, Open Source Drug Discovery Consortium +
, Scaria V +
, Meli R +
, Prasad A +
, Patowary A +
, Lalwani MK +
, Maini J +
, Sharma M +
, Singh AR +
, Kumar G +
, Jadhav V +
, Sivasubbu S +
, Schacherer J +
, Ruderfer DM +
, Gresham D +
, Dolinski K +
, Botstein D +
, Kruglyak L +
, Wilkinson M +
, Stein LD +
, Mungall C +
, Shu S +
, Caudy M +
, Mangone M +
, Day A +
, Nickerson E +
, Stajich JE +
, Harris TW +
, Arva A +
, Lewis S +
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Has description
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GBrowse is a combination of database and i … GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. Features include:
* Simultaneous bird's eye and detailed views of the genome.
* Scroll, zoom, center.
* Use a variety of [[GBrowse Configuration HOWTO#Glyphs and Glyph Options|premade glyphs]] or create your own.
* Attach arbitrary URLs to any annotation.
* Order and appearance of tracks are customizable by administrator and end-user.
* Search by annotation ID, name, or comment.
* Supports third party annotation using [[GFF]] formats.
* Settings persist across sessions.
* DNA and [[GFF]] dumps.
* Connectivity to different databases, including [[BioSQL]] and [[Chado]].
* Multi-language support.
* Third-party feature loading.
* Customizable [[GBrowse Plugins|plug-in]] architecture (e.g. run [[wp:BLAST|BLAST]], dump & import many formats, find oligonucleotides, [[PrimerDesigner.pm|design primers]], create restriction maps, edit features)
Note that the information on this page refers to GBrowse 2; GBrowse 1.x is recommended only for applications where legacy browser support is required and a single database is used.is required and a single database is used. +
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Has development status
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active +
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Has full name
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Generic Genome Browser +
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Has input format
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GFF3 +
, GFF2 +
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Has licence
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GPL2 +
, Artistic License +
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Has logo
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GBrowseLogo.png +
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Has publication details
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Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] Chapter 9: Unit 9.9 +
, BMC evolutionary biology 9: 221 +
, Tuberculosis (Edinburgh, Scotland) 89: 386-7 +
, Zebrafish 5: 125-30 +
, PloS one 2: e322 +
, Source code for biology and medicine 1: 4 +
, Genome research 12: 1599-610 +
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Has software maturity status
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mature +
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Has support status
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active +
|
Has title
|
WormBase +
, FlyBase +
, HapMap +
, Using the Generic Genome Browser (GBrowse). +
, SNP@Evolution: a hierarchical database of positive selection on the human genome. +
, TBrowse: an integrative genomics map of Mycobacterium tuberculosis. +
, FishMap: a community resource for zebrafish genomics. +
, Genome-wide analysis of nucleotide-level variation in commonly used Saccharomyces cerevisiae strains. +
, Gbrowse Moby: a Web-based browser for BioMoby Services. +
, The generic genome browser: a building block for a model organism system database. +
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Has topic
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GBrowse +
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Is open source
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Yes +
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Link type
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download +
, source code +
, website +
, wild URL +
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Published in
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Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] +
, BMC evolutionary biology +
, Tuberculosis (Edinburgh, Scotland) +
, Zebrafish +
, PloS one +
, Source code for biology and medicine +
, Genome research +
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Release date
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1 January 2001 +
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Tool functionality or classification
|
Genome Visualization & Editing +
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Written in language
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Perl +
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Has queryThis property is a special property in this wiki.
|
GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
, GBrowse +
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Has improper value forThis property is a special property in this wiki.
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Has title +
, Has description +
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Categories |
GBrowse +
, GMOD Components +
, GMOD Component +
, SemanticLink +
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Modification dateThis property is a special property in this wiki.
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2 December 2013 17:18:55 +
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Has subobjectThis property is a special property in this wiki.
|
GBrowse#http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/ +
, GBrowse#https://github.com/GMOD/GBrowse +
, GBrowse#http://gbrowse.org +
, GBrowse#http://www.wormbase.org/tools/genome/gbrowse/c_elegans/ +
, GBrowse#http://flybase.org/cgi-bin/gbrowse/dmel +
, GBrowse#http://hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/gbrowse +
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