Difference between revisions of "WebApollo"
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== Introduction == | == Introduction == | ||
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* ([[User:MitchSkinner|Mitch Skinner]] (Developed first version of JBrowse--no longer at UC Berkeley)) | * ([[User:MitchSkinner|Mitch Skinner]] (Developed first version of JBrowse--no longer at UC Berkeley)) | ||
| − | + | == Talks and Demos == | |
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| − | == Talks | + | |
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! Conference | ! Conference | ||
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| WebApollo demo/tutorial | | WebApollo demo/tutorial | ||
| Gregg Helt, Ed Lee, Monica | | Gregg Helt, Ed Lee, Monica | ||
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| + | == Project Meetings == | ||
| + | Project meetings normally take place on Mondays at 1:00pm California time. On the last Monday of the month we usually meet at 9am California time. | ||
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| + | == Links == | ||
| + | * [https://github.com/berkeleybop/jbrowse Client source on github] | ||
| + | * [http://code.google.com/p/apollo-web Annotation editing engine server source code on Google Code] | ||
| + | * [http://code.google.com/p/gbol Data model and I/O layer code used by editing engine on Google Code] | ||
| + | * [http://code.google.com/p/genomancer Trellis server code on Google Code] | ||
| + | * [http://apollo.berkeleybop.org/apollo_web/web_service_api.html Apollo Web service API] | ||
[[Category:Webapollo]] | [[Category:Webapollo]] | ||
Revision as of 21:13, 22 May 2012
Introduction
The Apollo genome annotation editor, which is a Java application, allows users to view, create, and edit genomic annotations in a graphical environment. WebApollo is a new project that aims to provide similar functionality in a client-server web-based environment.
Our overall goal is to develop a lightweight Web 2.0 infrastructure that will offer easy-to-use tools for collaborative genome annotation. This includes the design and implementation of:
- a web-browser-based version of Apollo built on top of JBrowse
- full support for two-way client-server exchange of genome annotations (DAS2)
- an annotation tracking system designed to support collaborative genome research projects
The WebApollo project is a collaboration between Suzanna Lewis's group at LBNL (the Berkeley Bioinformatics Open-source Projects group, or BBOP), the JBrowse project in Ian Holmes' group at Berkeley, and Chris Elsik's group at Georgetown.
This work is supported by an NIH grant (Lewis R01 GM080203).
Project members
- Suzanna Lewis (PI, LBNL)
- Ian Holmes (PI, UC Berkeley)
- Chris Elsik (PI, Georgetown)
- Rob Buels (UC Berkeley)
- Chris Childers (Georgetown)
- Nomi Harris (LBNL)
- Gregg Helt (LBNL)
- Ed Lee (LBNL)
- Monica Munoz-Torres (Georgetown)
- Justin Reese (Georgetown)
- (Mitch Skinner (Developed first version of JBrowse--no longer at UC Berkeley))
Talks and Demos
| Conference | Date | Title | Speaker | Abstract and/or slides |
|---|---|---|---|---|
| Binformatics Open Source Conference (BOSC) 2011 | July 15, 2011 | WebApollo: A web-based sequence annotation editor for community annotation | Nomi Harris | [Abstract] Slides |
| Entomological Society of America | November 13-16, 2011 | WebApollo demo/tutorial | Gregg Helt, Ed Lee, Monica |
Project Meetings
Project meetings normally take place on Mondays at 1:00pm California time. On the last Monday of the month we usually meet at 9am California time.
