Edit Tool data: Tripal

Jump to: navigation, search

You do not have permission to edit this page, for the following reason:

The action you have requested is limited to users in the group: Users.


The Basics[edit]

Name:
Full name if name is an abbreviation, acronym, etc.

Status:
Current development:
Support status:
Tool classification or features:
Platform: If the tool

Brief description:
Open source:
Software licence:
Type of input data e.g. genomic sequence; taxonomic group; protein identifier; anatomy ontology, etc.

Input formats:
Output formats:
Programming language(s)
Intended usage
First public release
Use standard tool display template? yes


Files[edit]

Logo (file name) enter the name of the file on the GMOD wiki, e.g. CoolAppLogo.png

Screenshot(s)

Contact details[edit]

Contact email
Mailing list(s)


Links[edit]

The majority of links related to the tool should be added using the interface at the bottom of the page.

Download text If there is not a simple download URL for downloading the tool, please enter download instructions here. Download URLs can be entered in the 'Links' section below.

Download source code text If there is not a simple download URL for downloading the source code for the tool, please enter download instructions here. URLs can be entered in the 'Links' section below.


Materials[edit]

Publications
Presentations
Tutorials


Extra Textual Goodies[edit]

Any introductory text for users
Software prerequisites
Installation
Configuration
Documentation
Development team
Development status
Download/usage tracking
Logo info
See also Any extra information, links, etc.

Extra items for component box


Free text:

Links

URL

Title

Link type (e.g. download; tutorial; demo)

Description

URL

Title

Link type (e.g. download; tutorial; demo)

Description

Interoperable components
Type of interaction

Component

Type of interaction

Component

Type of interaction

Component

Type of interaction

Component

Upload a related file

Cancel

Retrieved from "http://gmod.org/wiki/Tripal"
Facts about "Tripal"RDF feed
Available on platformweb +, linux +, unix + and os x +
Has URLhttp://tripal.info + and http://tripal.info/tutorials/v2.x/installation +
Has descriptionTripal is a web front end for Chado daTripal is a web front end for Chado databases, based on the Drupal content management system. Tripal leverages many of the features of Drupal--ability to search and edit content, detail pages for different types of content, customizable page layouts, and so on--to provide users with an intuitive, flexible interface to a database.

Features and advantages of Tripal:

  • Allows rapid development of an online genomic database.
  • Site administrators can add non-biological content to their sites and allow editing of content by non-technical users.
  • Integrates directly with GMOD Chado.
  • Provides visualizations for Chado "modules" such as features, analyses, libraries, stocks, and others.
  • Provides an interface for easy editing/updating of data in Chado.
  • Provides full text and categorical search capabilities for Chado content.
  • Can integrate GMOD tools such as CMap and GBrowse.
  • Integrates with powerful Drupal features like Drupal views and panels
  • Provides fully customizable PHP-based templates to allow users to change the look and feel of their installation
  • Web-based management of Chado (i.e. installation of Chado v1.11 and loading of ontologies)
  • Loaders for GFF3 and FASTA format files.
  • Provides an API to allow for creation of custom extensions by anyone.

What is Tripal capable of? Check out the Tripal demo server.

Tripal Homepage[edit]

Get the most up-to-date information about Tripal here.
bout Tripal here. +
Has development statusactive +
Has input formatGFF3 +, FASTA +, Chado DB +, tab-separated data + and OBO ontology files +
Has licenceGPLv2 +
Has logoTripalLogo.png +
Has software maturity statusmature +
Has support statusactive +
Has titleTripal Home + and Download and Install Tripal +
Has topicTripal +
Interaction typecan embed + and provides interface for +
InteractorTripal +
Interacts withGBrowse +, CMap +, Galaxy + and Chado +
Is open sourceYes +
Link typedownload +
Tool functionality or classificationDatabase (Chado) web front ends +, Database tools + and Development Platform (has API) +
Written in languagePHP +, Javascript + and HTML +
Has subobjectThis property is a special property in this wiki.Tripal#http://tripal.info +, Tripal +, Tripal +, Tripal +, Tripal + and Tripal#http://tripal.info/tutorials/v2.x/installation +