Difference between revisions of "Template:GMODEventsList"

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=== 2013 Events ===
 +
 
{| class="wikitable"
 
{| class="wikitable"
 
! colspan="2" | Date
 
! colspan="2" | Date
! Topic
+
! Conference / Topic(s)
! Conference / Location
+
! Location
 
! Contact
 
! Contact
 
|-
 
|-
| colspan="5" |
+
| colspan="8" bgcolor="#cccccc" |
 
|-
 
|-
! rowspan="3" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />1<br />1
+
! rowspan="6" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />1<br />3
! June 15-19
+
! July 19-23
| '''[http://www.iscb.org/ismbeccb2011 ISMB/ECCB 2011]'''
+
| '''[[2013 GMOD Summer School]]'''<br>
| Vienna, Austria
+
Training course on all things GMOD
 +
| [http://nescent.org NESCent], Durham, NC
 +
| [mailto:help@gmod.org GMOD Help Desk]
 +
|-
 +
! June 30 - July 2
 +
| '''[http://wiki.galaxyproject.org/Events/GCC2013 2013 Galaxy Community Conference (GCC2013)]''' <br />The [[Galaxy]] project's annual meeting.
 +
| Oslo, Norway
 +
| [[User:Clements|Dave Clements]]
 +
|-
 +
! April 7-10
 +
| '''[http://www.ebi.ac.uk/biocuration2013/home Biocuration 2013]'''
 +
| rowspan="2" | Cambridge, United Kingdom
 +
| n/a
 +
|-
 +
! April 5-6
 +
| '''2013 GMOD Meeting'''<br />Colocated with and immediately before [http://www.ebi.ac.uk/biocuration2013/home Biocuration 2013]
 +
| [[User:Scott|Scott Cain]]
 +
|-
 +
! January
 +
| '''PAGXXI''' (Plant and Animal Genomes)<br>See [[PAG 2013]] for details of GMOD at PAGXXI
 +
| San Diego, CA
 +
| [[User:Scott|Scott Cain]]
 +
|}
 +
 
 +
=== 2012 Events ===
 +
 
 +
{| class="wikitable"
 +
! colspan="2" | Date
 +
! Conference / Topic(s)
 +
! Location
 +
! Contact
 +
|-
 +
| colspan="8" bgcolor="#cccccc" |
 +
|-
 +
! rowspan="7" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />1<br />2
 +
! August 24-29
 +
| '''[[2012 GMOD Summer School]]'''
 +
| [http://nescent.org NESCent], Durham, North Carolina, United States
 +
| [[User:Scott|Scott Cain]]
 +
|-
 +
! July 25-27
 +
| '''[http://wiki.g2.bx.psu.edu/Events/GCC2012 2012 Galaxy Community Conference (GCC2012)]'''<br />The [[Galaxy]] project's annual meeting.
 +
| Chicago, Illinois, United States
 +
| [[User:Clements|Dave Clements]]
 +
|-
 +
! April 5-6
 +
| '''[[April 2012 GMOD Meeting]]'''<br />Colocated with and immediately following [http://pir.georgetown.edu/biocuration2012/ Biocuration 2012]
 +
| rowspan="2" | Washington, DC, United States
 +
| [[User:Scott|Scott Cain]]
 +
|-
 +
! April 2-4
 +
| '''[http://pir.georgetown.edu/biocuration2012/ Biocuration 2012]'''
 
|
 
|
 
|-
 
|-
! June 9-12
+
! January 23-25
| '''[http://www.k-state.edu/agc Arthropod Genomics Symposium]'''
+
| '''[http://evomics.org/workshops/advanced-topics/gmod/ GMOD Workshop]'''
 +
| rowspan="2" | [http://www.ckrumlov.info/php/ Český Krumlov, Czech Republic]
 +
| [[User:Scott|Scott Cain]]
 +
|-
 +
! January 8-21
 +
| '''[http://evomics.org/workshops/workshop-on-genomics/2012-genomics-cesky-krumlov/ Workshop on Genomics]'''<br />Covers a plethora of topics, including [[Galaxy]]
 +
| [[User:JamesTaylor|James Taylor]]
 +
|-
 +
! January 14-18
 +
| '''[[PAG 2012|Plant and Animal Genome XX (PAG 2012)]]''' <br />There will once again be a [[PAG 2012|strong GMOD presence]] at [http://www.intl-pag.org/ PAG], including a ''dedicated all-day GMOD Workshop''.
 +
| San Diego, California, United States
 +
| [[User:Scott|Scott Cain]]
 +
|}
 +
 
 +
=== 2011 Events ===
 +
 
 +
{| class="wikitable"
 +
! colspan="2" | Date
 +
! Conference / Topic(s)
 +
! Location
 +
! Contact
 +
|-
 +
| colspan="5" bgcolor="#cccccc" |
 +
|-
 +
! rowspan="18" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />1<br />1
 +
|-
 +
! October 23-24
 +
| '''[http://www.biovis.net/ IEEE Symposium on Biological Data Visualization (BioVis 2011)]''', part of [http://visweek.org/ VisWeek]
 +
: The [[Galaxy]] Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool<br />
 +
| Providence, Rhode Island, United States
 +
| Jeremy Goecks
 +
|-
 +
! October 12-13
 +
| '''[[October 2011 GMOD Meeting]]'''
 +
| [http://oicr.on.ca/ Ontario Institute for Cancer Research (OICR)], Toronto, Canada
 +
| [[User:Scott|Scott Cain]]
 +
|-
 +
! September 28-30
 +
| '''[[News/UC Davis Courses this September|Genome Annotation]]'''<br />Genome annotation using [[MAKER]] and [[Apollo]].
 +
| [http://bioinformatics.ucdavis.edu/ UC Davis Bioinformatics Core]
 +
| [[User:Bmoore|Barry Moore]]
 +
|-
 +
! September 19-22
 +
| '''[http://www.beyond-the-genome.com/program.html Genome Informatics Workshop @ Beyond the Genome 2011]'''
 +
| Washington, DC, United States
 +
| [[User:Lstein|Lincoln Stein]], [[User:JamesTaylor|James Taylor]]
 +
|-
 +
! July 15-19
 +
| '''[[ISMB/ECCB 2011]]'''<br />Included the Bioinformatics Open Source Conference (BOSC) and plenty of GMOD-related content.
 +
| Vienna, Austria
 +
| [[User:Scott|Scott Cain]]
 +
|-
 +
! July 10-23
 +
| '''[http://www.molecularevolution.org/workshops/WCG#wcgna Workshop on Comparative Genomics, North America]'''<br />Sessions on [[BioPerl]], [[Galaxy]] and [[GBrowse_syn]]
 +
| Fort Collins, Colorado, United States
 +
| [[User:Stajich|Jason Stajich]], [[User:DanB|Dan Blankenberg]], [[User:Mckays|Sheldon McKay]]
 +
|-
 +
! June 21-22
 +
| '''[http://ptools-fba.eventbrite.com/ Pathway Tools Flux Balance Analysis Tutorial]'''
 +
| SRI, Menlo Park, California, United States
 +
| [mailto:ptools-info@ai.sri.com Tomer Altman]
 +
|-
 +
! June 9-12
 +
| '''[[Arthropod Genomics 2011|Arthropod Genomics Symposium]]'''<br />GMOD had a strong presence with a mixture of talks, poster, and these workshops:<br />
 +
: '''Genome Project 101''', June 9, 4:00-6:00 p.m.
 +
: '''Comparative genomics with the generic synteny browser ([[GBrowse_syn]]): Configuration and display of various co-linearity data types''', June 11, 10:30-Noon
 
| Kansas City, Missouri, United States
 
| Kansas City, Missouri, United States
|
+
| [[User:Scott|Scott Cain]], [[User:Clements|Dave Clements]], [[User:Mckays|Sheldon McKay]]
 +
|-
 +
! May 28-31
 +
| '''[https://www.eshg.org/eshg2011.0.html European Human Genetics Conference 2011]'''<br />[[Galaxy]] Workshop
 +
| Amsterdam, The Netherlands
 +
| [[User:Clements|Dave Clements]]
 +
|-
 +
! May 25-26
 +
| '''[http://galaxy.psu.edu/gcc2011/ 2011 Galaxy Community Conference]'''
 +
: [http://galaxy.psu.edu/gcc2011/ Two full days] of presentations and discussion on extending [[Galaxy]] to use new tools and data sources, deploying Galaxy at your organization, and best practices for using Galaxy to further your research.
 +
| [http://galaxy.psu.edu/gcc2011/Logistics.html Conference Centre De Werelt, Lunteren, The Netherlands]
 +
| [[User:Clements|Dave Clements]]
 +
|-
 +
! April 13-14
 +
| '''[https://wiki.nbic.nl/index.php/NBIC_Galaxy_Hackathon_project NBIC Galaxy Hackathon]
 +
| Belgium (near Maastricht, the Netherlands)
 +
| [https://wiki.nbic.nl/index.php/NBIC_Galaxy_Hackathon_project NBIC]
 +
|-
 +
! April 12-14
 +
| '''[http://www.bio-itworldexpo.com/Bio-It_Expo_Content.aspx?id=101298 Dynamically Scalable, Accessible Analysis for High-Throughput Sequence Data]''' ([[Galaxy]])
 +
| [http://www.bio-itworldexpo.com/ Bio-IT World], Boston, Massachusetts, United States
 +
| [http://userwww.service.emory.edu/~eafgan/index.html Enis Afgan]
 +
|-
 +
! March 5-12
 +
| '''[[GMOD Americas 2011]]'''<br />This event includes:
 +
: [[March 2011 GMOD Meeting]]
 +
: [[Satellite Meetings - GMOD Americas 2011]]
 +
: [[2011 GMOD Spring Training]] (application deadline January 7)
 +
| [http://www.nescent.org/ NESCent], Durham, North Carolina, United States
 +
| [[User:Scott|Scott Cain]], [[User:Clements|Dave Clements]]
 +
|-
 +
! February 19-22
 +
| '''[http://conf.abrf.org/index.cfm/page/ConfProg.htm Galaxy Next Generation Sequencing Functionality from Sample Tracking to SNP Calling]'''
 +
| [https://conf.abrf.org/ ABRF 2011], San Antonio, Texas, United States
 +
| [mailto:greg@bx.psu.edu Greg Von Kuster]
 +
|-
 +
! February 2-5
 +
| '''[http://agbt.org/agenda.html Management and Analysis of Second and Third Generation Sequencing Data with Galaxy]'''
 +
| [http://agbt.org/ Advances in Genome Biology and Technology (AGBT 2011)], [http://agbt.org/marco.html Marco Island], Florida, United States
 +
| [http://www.bx.psu.edu/~anton/ Anton Nekrutenko], [[User:JamesTaylor|James Taylor]]
 
|-
 
|-
 
! January 15-19
 
! January 15-19
| '''[[PAG 2011|Plant and Animal Genome XIX]]'''<br />There will once again be a [[PAG 2011|strong GMOD presence]] at [http://www.intl-pag.org/ PAG], including for the first time, an all-day dedicated GMOD Workshop.<br />There ''will not'' be a [[Meetings|GMOD Community Meeting]] after PAG this year.
+
| '''[[PAG 2011|Plant and Animal Genome XIX]]'''<br />There was a [[PAG 2011|strong GMOD presence]] at [http://www.intl-pag.org/ PAG], including for the first time, a [http://www.intl-pag.org/19/19-gmod.html ''dedicated all-day GMOD Workshop''].
 
| San Diego, California, United States
 
| San Diego, California, United States
 
| [[User:Scott|Scott Cain]], [[User:Clements|Dave Clements]]
 
| [[User:Scott|Scott Cain]], [[User:Clements|Dave Clements]]
 
|-
 
|-
| colspan="5" |
+
! January 9-21
 +
| '''[http://www.molecularevolution.org/workshops/WCG Workshop on Comparative Genomics, Europe]'''<br />Sessions on [[Galaxy]] and [[GBrowse_syn]]
 +
| Český Krumlov, Czech Republic
 +
| [http://www.bx.psu.edu/~anton/ Anton Nekrutenko], [[User:Mckays|Sheldon McKay]]
 +
|}
 +
 
 +
=== 2002 through 2010 Events ===
 +
 
 +
{| class="wikitable"
 +
! colspan="2" | Date
 +
! Topic
 +
! Conference / Location
 +
! Contact
 +
|-
 +
| colspan="5" bgcolor="#cccccc" |
 +
|-
 +
! rowspan="24" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />1<br />0
 +
! November 15-16
 +
| '''[http://www.biomed.cam.ac.uk/gradschool/skills/intermine-developers.html InterMine Workshop]'''
 +
| [http://genetics.cam.ac.uk/ Department of Genetics], Cambridge, UK
 +
| [[User:Rsmith|Richard Smith]]
 
|-
 
|-
! rowspan="21" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />1<br />0
 
 
! November 8-12
 
! November 8-12
 
| '''[[GMOD Evo Hackathon|GMOD Tools For Evolutionary Biology Hackathon]]'''
 
| '''[[GMOD Evo Hackathon|GMOD Tools For Evolutionary Biology Hackathon]]'''
Line 32: Line 208:
 
|-
 
|-
 
! November 3-9
 
! November 3-9
| '''[http://meetings.cshl.edu/courses/c-ecg10.shtml Computational & Comparative Genomics]'''<br />This course will include material on [[Galaxy]] and [[BioMart]].
+
| '''Computational & Comparative Genomics'''<br />Included material on [[Galaxy]] and [[BioMart]].
 
| Cold Spring Harbor, NY, USA
 
| Cold Spring Harbor, NY, USA
 
| [http://people.virginia.edu/~wrp/ William Pearson]
 
| [http://people.virginia.edu/~wrp/ William Pearson]
 +
|-
 +
! November 3-4
 +
| '''[http://www.ashg.org/2010meeting/pages/workshops_Genomic_tools.shtml#5a UCSC Genome Browseer and Galaxy Workshops]
 +
| [http://www.ashg.org/ American Society of Human Genetics (ASHG)], Washington DC, United States
 +
| [mailto:kuhn@soe.ucsc.edu Robert Kuhn]
 +
|-
 +
! November 2
 +
| '''[http://blog.openhelix.eu/?p=5576 World Tour of Genome Browser and Galaxy of Analysis Tools]'''
 +
| Pre-[http://www.ashg.org/2010meeting/ ASHG] workshop put on by [http://openhelix.com OpenHelix] including content on [[BioMart]] and [[Galaxy]].  Washington DC, United States
 +
| [http://www.openhelix.com/cgi/contact.cgi OpenHelix]
 
|-
 
|-
 
! October 25-29
 
! October 25-29
Line 47: Line 233:
 
|-
 
|-
 
! rowspan="5" | September 13-16
 
! rowspan="5" | September 13-16
| '''[[GMOD Europe 2010]]'''<br />This [[GMOD Europe 2010|4 day event]] includes:
+
| '''[[GMOD Europe 2010]]'''<br />This [[GMOD Europe 2010|4 day event]] included:
 
| rowspan="5" | University of Cambridge, Cambridge, UK
 
| rowspan="5" | University of Cambridge, Cambridge, UK
 
| [[User:Scott|Scott Cain]], [[User:Clements|Dave Clements]]
 
| [[User:Scott|Scott Cain]], [[User:Clements|Dave Clements]]
Line 105: Line 291:
 
| '''[http://www.ebi.ac.uk/training/handson/course_100222_webservicesperl.html Programmatic Access To Biological Databases (Perl)]'''<br />
 
| '''[http://www.ebi.ac.uk/training/handson/course_100222_webservicesperl.html Programmatic Access To Biological Databases (Perl)]'''<br />
 
This includes sessions on [[BioMart]] and [[DAS]].
 
This includes sessions on [[BioMart]] and [[DAS]].
| [http://www.embl.ebi.ac.uk/ EMBL-EBI, Hinxton, UK]
+
| [http://www.ebi.ac.uk/ EMBL-EBI, Hinxton, UK]
 
|
 
|
 
|-
 
|-
Line 124: Line 310:
 
| [[User:Carsonholt|Carson Holt]]
 
| [[User:Carsonholt|Carson Holt]]
 
|-
 
|-
| colspan="5" |
+
| colspan="5" bgcolor="#cccccc" |
 
|-
 
|-
 
! rowspan="26" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />0<br />9
 
! rowspan="26" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />0<br />9
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|-
 
|-
 
! rowspan="2" | November 16-17
 
! rowspan="2" | November 16-17
| '''[http://www.biomed.cam.ac.uk/gradschool/skills/intermine.html InterMine Data Warehouse Workshop]
+
| '''InterMine Data Warehouse Workshop <!-- http://www.biomed.cam.ac.uk/gradschool/skills/intermine.html -->
 
| Cambridge, UK
 
| Cambridge, UK
| [mailto:richard@flymine.org Richard Smith]
+
| [[User:Rsmith|Richard Smith]]
 
|-
 
|-
 
| '''[[:Image:ISyIPGMODforComparativeGenomics.pdf|GMOD for Comparative Genomics]]'''
 
| '''[[:Image:ISyIPGMODforComparativeGenomics.pdf|GMOD for Comparative Genomics]]'''
Line 150: Line 336:
 
! rowspan="2" | October 27-30
 
! rowspan="2" | October 27-30
 
| '''[[:Image:GBrowse nextgen poster.pdf|GBrowse and Next Generation Sequencing Data]]'''
 
| '''[[:Image:GBrowse nextgen poster.pdf|GBrowse and Next Generation Sequencing Data]]'''
| rowspan="2" | [http://meetings.cshl.edu/meetings/info09.shtml Genome Informatics], Cold Spring Harbor, New York, USA
+
| rowspan="2" | Genome Informatics, Cold Spring Harbor, New York, USA
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
Line 157: Line 343:
 
|-
 
|-
 
! October 21-22
 
! October 21-22
| '''[http://www.ashg.org/2009meeting/pages/workshops.shtml#ucsc Interactive Workshops on the UCSC Genome Browser and Galaxy Framework]
+
| '''Interactive Workshops on the UCSC Genome Browser and Galaxy Framework
| [http://www.ashg.org/2009meeting/ The American Society of Human Genetics (AHSG)], Honolulu, Hawaii
+
| [http://www.ashg.org/ The American Society of Human Genetics (ASHG)], Honolulu, Hawaii
 
|
 
|
 
|-
 
|-
 
! October 12-27
 
! October 12-27
| '''[http://meetings.cshl.edu/courses/c-info09.shtml Programming for Biology]'''<br />This includes a session on [[GBrowse]].
+
| '''Programming for Biology'''<br />Session on [[GBrowse]].
| [http://www.cshl.edu Cold Spring Harbor Laboratory], Cold Spring Harobr, NY, USA
+
| [http://www.cshl.edu Cold Spring Harbor Laboratory], Cold Spring Harbor, NY, USA
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
 
! rowspan="3" | August 3-7
 
! rowspan="3" | August 3-7
| '''[[GMOD Europe 2009]]'''<br />This [[GMOD Europe 2009|week-long event]] included:
+
| '''[[GMOD Europe 2009]]'''<br />This week-long event included:
 
| rowspan="3"| University of Oxford, Oxford, United Kingdom
 
| rowspan="3"| University of Oxford, Oxford, United Kingdom
 
| [[User:Scott|Scott Cain]], [[User:Clements|Dave Clements]]
 
| [[User:Scott|Scott Cain]], [[User:Clements|Dave Clements]]
Line 196: Line 382:
 
! June 11-13
 
! June 11-13
 
| [[:Image:AGA NGS 2009.pdf|'''Seeing the forest ''and'' the trees: visualizing next generation sequence data''']]
 
| [[:Image:AGA NGS 2009.pdf|'''Seeing the forest ''and'' the trees: visualizing next generation sequence data''']]
| [http://www.regonline.com/Nextgeneration Next Generation Genome Analysis in Non-Model Organisms], Storrs, CT, USA
+
| Next Generation Genome Analysis in Non-Model Organisms, Storrs, CT, USA
 
| [[User:Clements|Dave Clements]]
 
| [[User:Clements|Dave Clements]]
 
|-
 
|-
Line 241: Line 427:
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
| colspan="5" |
+
| colspan="5" bgcolor="#cccccc" |
 
|-
 
|-
 
! rowspan="13"  style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />0<br />8
 
! rowspan="13"  style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />0<br />8
 
! October 30-31
 
! October 30-31
| '''[http://www.biomed.cam.ac.uk/gradschool/current/courses/intermine.html InterMine Data Warehouse Workshop]
+
| '''InterMine Data Warehouse Workshop
 
| Cambridge, UK
 
| Cambridge, UK
 
| [mailto:richard@flymine.org Richard Smith]
 
| [mailto:richard@flymine.org Richard Smith]
Line 302: Line 488:
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
| colspan="5" |
+
| colspan="5" bgcolor="#cccccc" |
 
|-
 
|-
 
! rowspan="5" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />0<br />7
 
! rowspan="5" style="font-size: 180%; line-height: 140%; vertical-align: top" | <br />2<br />0<br />0<br />7
Line 322: Line 508:
 
! July 9
 
! July 9
 
| '''[[:Image:Gmod OCCBio 2007.ppt|The GMOD Project: Creating Reusable Software Components for Genome Data]]
 
| '''[[:Image:Gmod OCCBio 2007.ppt|The GMOD Project: Creating Reusable Software Components for Genome Data]]
| [http://www.occbio.org/2007/ Ohio Collaborative Conference on Bioinformatics] at Miami University, Oxford, OH, USA
+
| Ohio Collaborative Conference on Bioinformatics at Miami University, Oxford, OH, USA
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
Line 330: Line 516:
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
| colspan="5" |
+
| colspan="5" bgcolor="#cccccc" |
 
|-
 
|-
 
! rowspan="2" | 2006
 
! rowspan="2" | 2006
Line 340: Line 526:
 
! May 10-14
 
! May 10-14
 
| '''[[:Image:BoG2006.pdf|An Example Comparative Genome Database for Yeasts Using GMOD Tools]]'''
 
| '''[[:Image:BoG2006.pdf|An Example Comparative Genome Database for Yeasts Using GMOD Tools]]'''
| [http://meetings.cshl.edu/archives/genome06.shtml The Biology of Genomes], Cold Spring Harbor, NY, USA
+
| The Biology of Genomes, Cold Spring Harbor, NY, USA
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
| colspan="5" |
+
| colspan="5" bgcolor="#cccccc" |
 
|-
 
|-
 
! rowspan="2" | 2005
 
! rowspan="2" | 2005
Line 356: Line 542:
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
| colspan="5" |
+
| colspan="5" bgcolor="#cccccc" |
 
|-
 
|-
 
! rowspan="2" | 2004
 
! rowspan="2" | 2004
Line 369: Line 555:
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
| colspan="5" |
+
| colspan="5" bgcolor="#cccccc" |
 
|-
 
|-
 
! rowspan="2"|2003
 
! rowspan="2"|2003
Line 382: Line 568:
 
| [[User:Scott|Scott Cain]]
 
| [[User:Scott|Scott Cain]]
 
|-
 
|-
| colspan="5" |
+
| colspan="5" bgcolor="#cccccc" |
 
|-
 
|-
 
! 2002
 
! 2002
 
! April 29-30
 
! April 29-30
| '''[[NIH 2002 Workshop on Model Organism Databases]]'''<br />You could say this meeting started GMOD.
+
| '''[[NIH 2002 Workshop on Model Organism Databases]]'''<br />The meeting where GMOD was born.
 
| NIH, Bethesda, Maryland
 
| NIH, Bethesda, Maryland
 
|
 
|
 
|}
 
|}

Latest revision as of 18:32, 29 March 2013

2013 Events

Date Conference / Topic(s) Location Contact

2
0
1
3
July 19-23 2013 GMOD Summer School

Training course on all things GMOD

NESCent, Durham, NC GMOD Help Desk
June 30 - July 2 2013 Galaxy Community Conference (GCC2013)
The Galaxy project's annual meeting.
Oslo, Norway Dave Clements
April 7-10 Biocuration 2013 Cambridge, United Kingdom n/a
April 5-6 2013 GMOD Meeting
Colocated with and immediately before Biocuration 2013
Scott Cain
January PAGXXI (Plant and Animal Genomes)
See PAG 2013 for details of GMOD at PAGXXI
San Diego, CA Scott Cain

2012 Events

Date Conference / Topic(s) Location Contact

2
0
1
2
August 24-29 2012 GMOD Summer School NESCent, Durham, North Carolina, United States Scott Cain
July 25-27 2012 Galaxy Community Conference (GCC2012)
The Galaxy project's annual meeting.
Chicago, Illinois, United States Dave Clements
April 5-6 April 2012 GMOD Meeting
Colocated with and immediately following Biocuration 2012
Washington, DC, United States Scott Cain
April 2-4 Biocuration 2012
January 23-25 GMOD Workshop Český Krumlov, Czech Republic Scott Cain
January 8-21 Workshop on Genomics
Covers a plethora of topics, including Galaxy
James Taylor
January 14-18 Plant and Animal Genome XX (PAG 2012)
There will once again be a strong GMOD presence at PAG, including a dedicated all-day GMOD Workshop.
San Diego, California, United States Scott Cain

2011 Events

Date Conference / Topic(s) Location Contact

2
0
1
1
October 23-24 IEEE Symposium on Biological Data Visualization (BioVis 2011), part of VisWeek
The Galaxy Track Browser: Transforming the Genome Browser from Visualization Tool to Analysis Tool
Providence, Rhode Island, United States Jeremy Goecks
October 12-13 October 2011 GMOD Meeting Ontario Institute for Cancer Research (OICR), Toronto, Canada Scott Cain
September 28-30 Genome Annotation
Genome annotation using MAKER and Apollo.
UC Davis Bioinformatics Core Barry Moore
September 19-22 Genome Informatics Workshop @ Beyond the Genome 2011 Washington, DC, United States Lincoln Stein, James Taylor
July 15-19 ISMB/ECCB 2011
Included the Bioinformatics Open Source Conference (BOSC) and plenty of GMOD-related content.
Vienna, Austria Scott Cain
July 10-23 Workshop on Comparative Genomics, North America
Sessions on BioPerl, Galaxy and GBrowse_syn
Fort Collins, Colorado, United States Jason Stajich, Dan Blankenberg, Sheldon McKay
June 21-22 Pathway Tools Flux Balance Analysis Tutorial SRI, Menlo Park, California, United States Tomer Altman
June 9-12 Arthropod Genomics Symposium
GMOD had a strong presence with a mixture of talks, poster, and these workshops:
Genome Project 101, June 9, 4:00-6:00 p.m.
Comparative genomics with the generic synteny browser (GBrowse_syn): Configuration and display of various co-linearity data types, June 11, 10:30-Noon
Kansas City, Missouri, United States Scott Cain, Dave Clements, Sheldon McKay
May 28-31 European Human Genetics Conference 2011
Galaxy Workshop
Amsterdam, The Netherlands Dave Clements
May 25-26 2011 Galaxy Community Conference
Two full days of presentations and discussion on extending Galaxy to use new tools and data sources, deploying Galaxy at your organization, and best practices for using Galaxy to further your research.
Conference Centre De Werelt, Lunteren, The Netherlands Dave Clements
April 13-14 NBIC Galaxy Hackathon Belgium (near Maastricht, the Netherlands) NBIC
April 12-14 Dynamically Scalable, Accessible Analysis for High-Throughput Sequence Data (Galaxy) Bio-IT World, Boston, Massachusetts, United States Enis Afgan
March 5-12 GMOD Americas 2011
This event includes:
March 2011 GMOD Meeting
Satellite Meetings - GMOD Americas 2011
2011 GMOD Spring Training (application deadline January 7)
NESCent, Durham, North Carolina, United States Scott Cain, Dave Clements
February 19-22 Galaxy Next Generation Sequencing Functionality from Sample Tracking to SNP Calling ABRF 2011, San Antonio, Texas, United States Greg Von Kuster
February 2-5 Management and Analysis of Second and Third Generation Sequencing Data with Galaxy Advances in Genome Biology and Technology (AGBT 2011), Marco Island, Florida, United States Anton Nekrutenko, James Taylor
January 15-19 Plant and Animal Genome XIX
There was a strong GMOD presence at PAG, including for the first time, a dedicated all-day GMOD Workshop.
San Diego, California, United States Scott Cain, Dave Clements
January 9-21 Workshop on Comparative Genomics, Europe
Sessions on Galaxy and GBrowse_syn
Český Krumlov, Czech Republic Anton Nekrutenko, Sheldon McKay

2002 through 2010 Events

Date Topic Conference / Location Contact

2
0
1
0
November 15-16 InterMine Workshop Department of Genetics, Cambridge, UK Richard Smith
November 8-12 GMOD Tools For Evolutionary Biology Hackathon NESCent, Durham, North Carolina, United States Dave Clements
November 3-9 Computational & Comparative Genomics
Included material on Galaxy and BioMart.
Cold Spring Harbor, NY, USA William Pearson
November 3-4 UCSC Genome Browseer and Galaxy Workshops American Society of Human Genetics (ASHG), Washington DC, United States Robert Kuhn
November 2 World Tour of Genome Browser and Galaxy of Analysis Tools Pre-ASHG workshop put on by OpenHelix including content on BioMart and Galaxy. Washington DC, United States OpenHelix
October 25-29 Pathway Tools Workshop SRI International, Menlo Park, CA, USA Tomer Altman
October 11-14 Biocuration 2010 Tokyo International Exchange Center, Odaiba, Tokyo, Japan Biocuration2010@ics-inc.co.jp
September 13-16 GMOD Europe 2010
This 4 day event included:
University of Cambridge, Cambridge, UK Scott Cain, Dave Clements
September 2010 GMOD Meeting
Scott Cain
Satellite Meetings
Dave Clements
InterMine Workshop
Richard Smith
BioMart Workshop
Xose Fernandez
July 9-13 There was a lot of GMOD related content at ISMB 2010 this year. See the ISMB 2010 page and flier for a complete list. ISMB 2010, Boston, MA, USA Scott Cain
June 29-30 GMOD for Evolutionary Biology iEvoBio 2010, Portland, OR, USA Dave Clements
June 10-13 MAKER: Genome annotation made easy Arthropod Genomics Symposium, Kansas City, MO, USA Carson Holt
May 15-17 First Galaxy Developers Conference Cold Spring Harbor, NY, USA
May 6-9 2010 GMOD Summer School - Americas NESCent, Durham, North Carolina, United States Dave Clements
March 20-23 GMOD Browser Tools and Exercises Workshop ABRF 2010, Sacramento, CA, USA Mitch Skinner
March 3-5 EMBO Workshop on Visualizing Biological Data (VizBi) EMBL Advanced Training Centre, Heidelberg, Germany. Adela Valceanu
February 22-26 Programmatic Access To Biological Databases (Perl)

This includes sessions on BioMart and DAS.

EMBL-EBI, Hinxton, UK
January 14-15 January 2010 GMOD Meeting San Diego, California, United States Scott Cain
January 9-13 The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse Plant and Animal Genome XVII Conference (PAG 2010), San Diego, CA, USA
See PAG 2010 for links to many talks and presentations.
Scott Cain
Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your comparative genomics data with GBrowse_syn Sheldon McKay
MAKER: An easy to use genome annotation pipeline Carson Holt

2
0
0
9
December 8 Database Tools for Biologists Texas A&M University, College Station, Texas, US Dave Clements
November 16-17 InterMine Data Warehouse Workshop Cambridge, UK Richard Smith
GMOD for Comparative Genomics Information Systems for Insect Pests, Rennes, France Dave Clements
October 28-30 Database Tools for Biologists: A Half-Day GMOD Workshop Bioinformatics Australia 2009 (BA2009), Melbourne, Australia Dave Clements
Visualizing Next Generation Sequence Data with GBrowse and SAMtools (poster)
October 27-30 GBrowse and Next Generation Sequencing Data Genome Informatics, Cold Spring Harbor, New York, USA Scott Cain
Genome Visualization and Comparison using CMap and Circos Ken Youens-Clark
October 21-22 Interactive Workshops on the UCSC Genome Browser and Galaxy Framework The American Society of Human Genetics (ASHG), Honolulu, Hawaii
October 12-27 Programming for Biology
Session on GBrowse.
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA Scott Cain
August 3-7 GMOD Europe 2009
This week-long event included:
University of Oxford, Oxford, United Kingdom Scott Cain, Dave Clements
2009 GMOD Summer School - Europe
Dave Clements
August 2009 GMOD Meeting
Scott Cain
July 20-23 Biomedical Ontologies Tutorials International Conference of Biomedical Ontologies (ICBO), Buffalo, NY, USA Barry Smith
July 16-19 2009 GMOD Summer School - Americas NESCent, Durham, North Carolina, United States Dave Clements
June 11 Chado Databases and Integration with GMOD Tools 2009 Arthropod Genomics Symposium, Kansas City, MO, USA Scott Cain
June 11-13 Seeing the forest and the trees: visualizing next generation sequence data Next Generation Genome Analysis in Non-Model Organisms, Storrs, CT, USA Dave Clements
June 6 Database Tools for Evolutionary Genomics: An introduction to GMOD software for managing, annotating and visualizing genomic data
See below for links to individual talks.
SMBE 2009, Iowa City, IA, USA Dave Clements
Using GMOD for evolutionary genomics and next generation sequence data
Dave Clements
The CMap Comparative Map Browser and Displaying Population distributions with GBrowse and PhyloGeoViz
Ben Faga
Comparative genomics with GBrowse_syn
Sheldon McKay
Simplifying genome annotation and functional genomics with MAKER—the easy-to-use genome annotation pipeline
Mark Yandell
April 2 Visualizing and Integrating Next Generation Sequence Data using GMOD Evolutionary Genetics - the impact of next generation sequencing technologies, Lutherstadt-Wittenberg, Germany Dave Clements
January 15-16 January 2010 GMOD Meeting San Diego, CA, USA Scott Cain
January 10-14 See PAG 2009 for links to many talks and presentations. Plant and Animal Genome XVII Conference (PAG 2009), San Diego, CA, USA
Comparative Genomics with GBrowse_syn: A hands on workshop for visualizing your syntenic data with GBrowse_syn Sheldon McKay
The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse Scott Cain

2
0
0
8
October 30-31 InterMine Data Warehouse Workshop Cambridge, UK Richard Smith
September 22-23 BioCyc / Pathway Tools Tutorial London, UK Peter Karp
September 2-5 Pathway Tools Tutorial Menlo Park, CA, USA Peter Karp
July 20-24 See ISMB 2008 for a full list of GMOD related posters and presentations. ISMB 2008, Toronto, ON, Canada
July 16-17 July 2008 GMOD Meeting University of Toronto, Toronto, ON, Canada Scott Cain
July 11-13 2008 GMOD Summer School NESCent, Durham, North Carolina, United States Dave Clements
June 4-7 GMOD: Genomics Resources for Emerging Model Organisms American Genetic Association Annual Symposium, Raleigh, NC, USA Dave Clements
April 10-13 Community Contributions to Genome Annotation (Apollo) Arthropod Genomics Symposium, Kansas City, MO, USA
See GMOD at Arthropod Genomics for a complete list.
Christine Elsik
Chado - A Database Schema for Integrating Biological Data Scott Cain
GMOD: Database Resources for Emerging Model Organisms Dave Clements
April 4-6 GMOD: Informatics Resources for Evolutionary Research IGERT Symposium on Evolution, Development, and Genomics, Eugene, OR, USA Dave Clements
GMOD Tools for Comparative Genomics
January 15 The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse Plant and Animal Genome XVII Conference (PAG 2008) Scott Cain

2
0
0
7
November 5-7 November 2007 GMOD Meeting Cold Spring Harbor, NY, USA Scott Cain
November 1-5 Digesting the Genome Glut: Promoting the Use and Extension of GMOD To Emerging Model Organisms Genome Informatics 2007, Cold Spring Harbor, NY, USA Dave Clements
August 23-24 Hackathon 2007 Northwestern University, Chicago, Illinois, USA Scott Cain
July 9 The GMOD Project: Creating Reusable Software Components for Genome Data Ohio Collaborative Conference on Bioinformatics at Miami University, Oxford, OH, USA Scott Cain
January 18-19 January 2007 GMOD Meeting San Diego, CA, USA Scott Cain
2006 June 29-30 June 2006 GMOD Meeting NESCent, Durham, North Carolina, United States Scott Cain
May 10-14 An Example Comparative Genome Database for Yeasts Using GMOD Tools The Biology of Genomes, Cold Spring Harbor, NY, USA Scott Cain
2005 October 27-28 October 2005 GMOD Meeting Cold Spring Harbor, New York, before Genome Informatics Scott Cain
May 16-17 May 2005 GMOD Meeting Menlo Park, California, at SRI Scott Cain
2004 October 4-5 October 2004 GMOD Meeting Cold Spring Harbor, New York Scott Cain
April 26-28 April 2004 GMOD Meeting Cambridge, Massachusetts Scott Cain
2003 May 6-7 May 2003 GMOD Meeting Cold Spring Harbor, New York, before Genome Informatics Scott Cain
February 5 February 2003 GMOD Meeting San Diego, California, coinciding with the O'Reilly Bioinformatics Technology Conference Scott Cain
2002 April 29-30 NIH 2002 Workshop on Model Organism Databases
The meeting where GMOD was born.
NIH, Bethesda, Maryland