Difference between revisions of "Template:GMODComponents"
From GMOD
m (New page: {| border="0" cellspacing="0" width=70% |- |'''Comparative Genomics Visualization''' | '''Genome Visualization & Editing''' |'''Community Visualization''' |- |CMap |Apollo | [[Com...) |
Eric Rasche (Talk | contribs) m (Added galaxy to workflow management, moved tigr up because tigr + galaxy are only active ones.) |
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+ | <!-- Multi-column list is much easier to edit than wikitable ; | ||
+ | pipe starts new column--> | ||
+ | {|width=80% align="center" cellpadding="10px" | ||
+ | | valign="top" | | ||
+ | '''Community Annotation''' | ||
+ | |||
+ | [[Apollo]] | ||
+ | |||
+ | [[BioDIG]] | ||
+ | |||
+ | [[Canto]] | ||
+ | |||
+ | [[WebApollo]] | ||
+ | |||
+ | Wiki [[TableEdit]] | ||
+ | |||
+ | |||
+ | '''Comparative Genome Visualization''' | ||
+ | |||
+ | [[CMap]] | ||
+ | |||
+ | [[GBrowse_syn]] | ||
+ | |||
+ | [[Pathway Tools]] | ||
+ | |||
+ | [[SynView]] | ||
+ | |||
+ | [[Sybil]] | ||
+ | |||
+ | |||
+ | '''Database schema''' | ||
+ | |||
+ | [[Chado]] | ||
+ | |||
+ | |||
+ | '''Database tools''' | ||
+ | |||
+ | [[Argos]] | ||
+ | |||
+ | [[BioMart]] | ||
+ | |||
+ | [[Genome grid]] | ||
+ | |||
+ | [[GMODTools]] | ||
+ | |||
+ | [[InterMine]] | ||
+ | |||
+ | [[LuceGene]] | ||
+ | |||
+ | [[XORT]] | ||
+ | |||
+ | |||
+ | | valign="top" | | ||
+ | |||
+ | '''Gene Expression Visualization''' | ||
+ | |||
+ | [[Caryoscope]] | ||
+ | |||
+ | [[GeneXplorer]] | ||
+ | |||
+ | [[Pathway Tools]] | ||
+ | |||
+ | |||
+ | '''Genome Annotation''' | ||
+ | |||
+ | [[Apollo]] | ||
+ | |||
+ | [[DIYA]] | ||
+ | |||
+ | [[MAKER]] | ||
+ | |||
+ | [[SOBA]] | ||
+ | |||
+ | [[WebApollo]] | ||
+ | |||
+ | |||
+ | '''Genome Visualization & Editing''' | ||
+ | |||
+ | [[Apollo]] | ||
+ | |||
+ | [[Flash GViewer]] | ||
+ | |||
+ | [[GBrowse]] | ||
+ | |||
+ | [[JBrowse]] | ||
+ | |||
+ | [[Pathway Tools]] | ||
+ | |||
+ | [[WebGBrowse]] | ||
+ | |||
+ | [[WebApollo]] | ||
+ | |||
+ | |||
+ | '''Literature and Curation Tools''' | ||
+ | |||
+ | [[BioDIG]] | ||
+ | |||
+ | [[Canto]] | ||
+ | |||
+ | [[Textpresso]] | ||
+ | |||
+ | | valign="top" | | ||
+ | |||
+ | '''Molecular Pathway Visualization''' | ||
+ | |||
+ | [[Pathway Tools]] | ||
+ | |||
+ | |||
+ | '''Ontology Visualization''' | ||
+ | |||
+ | [[GO_Graphic_Viewer|Go Graphic Viewer]] | ||
+ | |||
+ | |||
+ | '''Workflow Management''' | ||
+ | |||
+ | [[Galaxy]] | ||
+ | |||
+ | [[TIGR-Workflow_/_Ergatis|Ergatis]] | ||
+ | |||
+ | [[DIYA]] | ||
+ | |||
+ | [[ISGA]] | ||
+ | |||
+ | |||
+ | '''Middleware''' | ||
+ | |||
+ | [[Modware]] | ||
+ | |||
+ | [[:Chado::AutoDBI]] | ||
+ | |||
+ | [[:Bio::Chado::Schema]] | ||
+ | |||
+ | |||
+ | '''Tool Integration''' | ||
+ | |||
+ | [[Galaxy]] | ||
+ | |||
+ | |||
+ | '''Sequence Alignment''' | ||
+ | |||
+ | [[BLAST_Graphic_Viewer|Blast Graphic]] | ||
+ | |||
+ | |||
+ | '''Website front end for Chado DB''' | ||
+ | |||
+ | [[Tripal]] | ||
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|} | |} | ||
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+ | [[Category:GMOD Components]] |
Latest revision as of 10:26, 22 July 2016
Community Annotation Wiki TableEdit
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Gene Expression Visualization
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Molecular Pathway Visualization
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