Difference between revisions of "Template:GBrowse syn abstract"

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[[GBrowse_syn]] is a [[GBrowse]]-based [[synteny]] browser designed to display multiple genomes, with a central reference species compared to two or more additional species.  It is included with the standard GBrowse package (version 1.69 and later).   A working example can be seen at [http://dev.wormbase.org/db/seq/gbrowse_syn WormBase].
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[[Image:GBrowse_syn.png|right|thumb|400px|GBrowse_syn, as implemented at WormBase]]
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[[GBrowse_syn]], or the Generic Synteny Browser, is a [[GBrowse]]-based [[synteny]] browser designed to display multiple genomes, with a central reference species compared to two or more additional species. &nbsp;It can be used to view multiple sequence alignment data, synteny or co-linearity data from other sources against genome annotations provided by GBrowse. GBrowse_syn is included with the standard GBrowse package (version 1.69 and later).  &nbsp;Working examples can be seen at [http://www.arabidopsis.org/cgi-bin/gbrowse_syn/arabidopsis/?name=Chr1%3A8367000..8370501 TAIR], <span class="pops">[http://dev.wormbase.org/db/seq/gbrowse_syn/compara?search_src=Cele;name=X:1050001..1150000 WormBase]</span>, and [http://solgenomics.net/gbrowse2/bin/gbrowse_syn/sol3/ SGN].

Latest revision as of 17:48, 22 February 2012

GBrowse_syn, as implemented at WormBase

GBrowse_syn, or the Generic Synteny Browser, is a GBrowse-based synteny browser designed to display multiple genomes, with a central reference species compared to two or more additional species.  It can be used to view multiple sequence alignment data, synteny or co-linearity data from other sources against genome annotations provided by GBrowse. GBrowse_syn is included with the standard GBrowse package (version 1.69 and later).  Working examples can be seen at TAIR, WormBase, and SGN.