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  • #REDIRECT [[Tripal Tutorial v1.1]]
    97 B (10 words) - 17:44, 12 July 2013
  • This [[:Category:Tutorials|tutorial]] walks you through how to install and configure a [[Chado]] database, Chad ...this course you'll be working with genome annotation data from the [[MAKER Tutorial|MAKER session]]. We'll simplify this and start by considering that we have
    54 KB (8,190 words) - 23:34, 8 October 2012
  • This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2012 GMOD Summe
    50 KB (7,599 words) - 16:26, 2 September 2018
  • 77 KB (11,812 words) - 00:39, 21 May 2014
  • #redirect [[GBrowse syn Tutorial 2013]]
    117 B (12 words) - 16:02, 22 July 2013
  • ; [[GBrowse Tutorial 2012|GBrowse tutorial from 2013 GMOD Summer School]] : This tutorial was taught by [[User:Scott|Scott Cain]] at the [[2013 GMOD Summer School]]
    2 KB (236 words) - 17:10, 18 December 2013
  • ...ce (PAG-XVI)], January 12-16, 2008, in San Diego. This will be a hands-on tutorial on how to install and use the [[GBrowse]] genome browser. If you are atten See the [http://www.intl-pag.org/16/16-gbrowse.html PAG tutorial page] for additional information.
    515 B (77 words) - 20:55, 24 January 2011
  • ...ll hold a [http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools tutorial session] from September 2-5, 2008, at SRI International in Menlo Park, CA. ...e see the [http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools Tutorial page] for a detailed schedule, registration information, and other details.
    828 B (116 words) - 21:22, 24 January 2011
  • ...tutorial] well be held September 22-23, 2008 at Kings College London. This tutorial is kindly hosted by the [http://www.kcl.ac.uk/schools/pse/bioinform/ Centre The tutorial is free of charge.
    1 KB (194 words) - 21:26, 24 January 2011
  • ...released by [http://www.openhelix.com OpenHelix] this week. The narrated tutorial covers: The tutorial also includes [http://www.openhelix.com/downloads/gbrowse/gbrowseslidesDL.s
    2 KB (268 words) - 23:07, 9 October 2012
  • [[File:BA2009Logo.png|link=GBrowse NGS Tutorial|100px|right|GBrowse NGS Tutorial]] ...the [[BA2009|Bioinformatics Australia 2009 (BA2009) GMOD Workshop]]. The tutorial includes a [[VMware]] image to work with and step-by-step instructions for
    1 KB (156 words) - 23:10, 9 October 2012
  • ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].
    16 KB (2,387 words) - 22:13, 11 February 2014
  • #REDIRECT [[MAKER Tutorial 2013]]
    76 B (7 words) - 23:34, 29 July 2013
  • #REDIRECT [[WebApollo Tutorial 2013]]
    84 B (7 words) - 23:35, 29 July 2013
  • This [[:Category:Tutorials|tutorial]] walks you through setting up and running a [[JBrowse]] server. ...latfile-to-json.pl</tt>. We'll use some more of the data from the [[MAKER Tutorial|MAKER session]]:
    9 KB (1,327 words) - 22:46, 3 October 2012
  • #REDIRECT [[JBrowse Tutorial 2013]]
    112 B (10 words) - 16:02, 22 July 2013
  • If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm ...discuss these options in more detail later on. if you are following this tutorial outside of class adjust the following values in a text editor.
    80 KB (12,961 words) - 23:47, 29 July 2013
  • This [[:Category:Tutorials|tutorial]] walks you through how to use the Artemis annotation editor with a [[Chado ...this is included for completeness only and you should refer to the [[Chado Tutorial|Chado session]] for more details on this.
    17 KB (2,626 words) - 23:33, 8 October 2012
  • #REDIRECT [[Galaxy Tutorial 2013]]
    78 B (7 words) - 23:35, 29 July 2013
  • #REDIRECT [[Apollo Tutorial 2011]]
    78 B (7 words) - 22:30, 12 February 2013
  • #REDIRECT [[Chado Tutorial 2013]]
    76 B (7 words) - 15:52, 17 July 2013
  • 199 B (27 words) - 21:41, 2 October 2012
  • #REDIRECT [[JBrowse Tutorial 2013]]
    80 B (7 words) - 23:35, 29 July 2013
  • This [[:Category:Tutorials|tutorial]] walks you through how to configure the [[GBrowse]] genome browser to disp This tutorial was taught using a [[VMware]] system image as a starting point. If you wan
    38 KB (5,742 words) - 18:11, 9 October 2012
  • #REDIRECT [[GBrowse Tutorial]]
    30 B (3 words) - 19:49, 22 October 2009
  • 367 B (55 words) - 19:04, 14 November 2009
  • 34 KB (5,308 words) - 22:03, 3 October 2012
  • ...stall and configure the [[GBrowse_syn]] comparative genomics viewer. This tutorial was originally taught by [[User:Mckays|Sheldon McKay]] at the 2009 [[GMOD S | valign="top" |This tutorial was taught using a [[VMware]] system image as a starting point. If you wan
    19 KB (2,507 words) - 18:53, 8 October 2012
  • A remote online attendance option for the tutorial is available.
    1,011 B (149 words) - 05:24, 5 May 2011
  • There's a roughly written tutorial on how to create your own data adapter. It covers some information on the
    34 KB (5,242 words) - 00:21, 14 February 2013
  • '''The most recent version of this tutorial is available at the [[Tripal Tutorial]] page.''' ...ent in the screen shots but will appear in the live version. However, the tutorial is still quite useful for learning to use Tripal v0.3b.
    80 KB (12,830 words) - 20:41, 2 October 2012
  • #REDIRECT [[SOBA Tutorial 2012]]
    74 B (7 words) - 23:37, 29 July 2013
  • 21 KB (2,890 words) - 22:24, 3 October 2012
  • 23 KB (3,325 words) - 20:52, 3 October 2012
  • ...for your server you will need to manually convert the paths shown in this tutorial to wherever your Apache document root may reside. ...When possible, alternative command-line statements have been added to this tutorial as users of other Linux version have provided feedback. Unless specificall
    92 KB (14,708 words) - 23:27, 5 September 2012
  • 153 B (22 words) - 19:57, 5 August 2011
  • File:Web apollo 2012 tutorial track list json.zip
    (825 B) - 22:37, 5 September 2012
  • This [[Has topic::WebApollo]] tutorial was presented by [[User:Elee|Ed Lee]] at the [[2012 GMOD Summer School]]. ...bApollo was not officially released when this session was taught, and this tutorial was run using a beta version of the tool.'''
    43 KB (6,301 words) - 20:52, 27 August 2013
  • ...allation, usage and administration of a Tripal-based genome website. This tutorial guides the user through the process of installation, setup and data loading ...When possible, alternative command-line statements have been added to this tutorial as users of other Linux version have provided feedback. Unless specificall
    131 KB (21,091 words) - 21:53, 2 January 2014
  • This tutorial is intended to be used with the Virtual Machine Image that comes pre-instal ...t we can skip large sections as the VM has already been prepared. For this tutorial, follow these steps:
    2 KB (375 words) - 23:28, 5 September 2012
  • #REDIRECT [[BioMart Tutorial]]
    52 B (5 words) - 05:08, 11 November 2011
  • Welcome to the [[Tripal]] v1.0 Tutorial. Here you will find instructions for installation, usage and administratio <font color="red">'''Note:''' An updated tutorial for Tripal v1.1 can be found [http://www.gmod.org/wiki/Tripal_Tutorial_v1.1
    99 KB (16,007 words) - 17:43, 12 July 2013
  • Registration for the GBrowse tutorial at ASPB is now closed, with 97 registered attendees. ...od"; the password for that user is also gmod, which we may need during the tutorial.
    3 KB (527 words) - 00:06, 12 September 2012
  • ...B::Sam must be installed. This is based on the [[GBrowse_NGS_Tutorial|NGS tutorial]] that Dave Clements wrote. ...am.gz|SAM file]] and save in the GBrowse database directory for the volvox tutorial. Also make sure that the volvox fasta file, volvox.fa, is in the directory
    5 KB (853 words) - 00:19, 23 October 2012
  • ...g and configuring [[Tripal]], a web front end to [[Chado]] databases. This tutorial references (and complements) the [[Media:TripalUsersGuideJan2010.pdf|Tripal
    58 KB (8,529 words) - 18:12, 9 October 2012
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:RobertBuels|Robert Buels]] at the [[2013 GMOD Summe This tutorial uses the AWS AMI '''ami-d2c8b1bb''' named '''2013 GMOD start day 3''' in th
    14 KB (1,948 words) - 20:48, 27 August 2013
  • For the moment, [http://tomotvos.ca/cloud/how-to-resize-an-aws-volume/ this tutorial] is a good guide to resizing EBS partitions on EC2 machines.
    8 KB (1,350 words) - 01:26, 13 September 2012
  • The following tutorial was presented as part of the [[2011 GMOD Spring Training]].
    15 KB (1,843 words) - 23:03, 20 August 2012
  • This tutorial on [[GFF]] was given by [[User:Scott|Scott Cain]] at the [[2012 GMOD Summer ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information.
    16 KB (2,352 words) - 21:54, 11 September 2012
  • This [[:Category:Tutorials|tutorial]] walks you through setting up and running a [[Galaxy]] server. ...ttp://bitbucket.org/galaxy/galaxy-central/wiki/ExternalDisplayApplications/Tutorial You can customize what external applications are available for displaying d
    32 KB (4,846 words) - 21:16, 9 October 2012

Page text matches

  • ...his eventually became what is described in the [[Artemis-Chado Integration Tutorial]]. [[User:Clements|Dave C.]]''
    40 KB (5,672 words) - 21:27, 15 August 2013
  • <li>Including a tutorial for guiding the user on the application's use is a very good idea.
    6 KB (985 words) - 05:18, 28 January 2008
  • * [[Chado Tutorial]]
    3 KB (469 words) - 18:08, 13 February 2014
  • ...last pipeline and a protein analysis pipeline.It is hope that through this tutorial, two objectives are achieved:
    2 KB (272 words) - 12:53, 29 December 2010
  • |tutorials=;[http://www.gramene.org/tutorials/cmap.html Tutorial @ Gramene] |doc=* [http://www.gramene.org/tutorials/cmap.html Gramene CMap User Tutorial],
    7 KB (996 words) - 23:40, 17 October 2013
  • ...s relies heavily on the {{GBrowseAdminTutorialLink| GBrowse Administration Tutorial}}. ; [[GBrowse Tutorial 2010|GBrowse tutorial from 2010 GMOD Summer School]]
    10 KB (1,396 words) - 17:18, 2 December 2013
  • ...d for those who may not be familiar with Chado and how it is structured. A tutorial with a few use case scenarious that describe what each line does would be i
    9 KB (1,641 words) - 15:48, 12 September 2011
  • ...ff/tutorial.html?content-type=text%2Fhtml Using GBrowse with Bio::DB::GFF] tutorial, is the older version of the [[GFF]] feature annotation format. Its main li
    11 KB (1,733 words) - 14:48, 18 May 2013
  • * [http://webgbrowse.cgb.indiana.edu/tutorial.html User Tutorial] - this is an extensive user guide for WebGBrowse ;[http://webgbrowse.cgb.indiana.edu/webgbrowse/tutorial.html WebGBrowse Tutorial]
    4 KB (540 words) - 18:31, 10 September 2013
  • | tentative Chado database discussion/tutorial session
    2 KB (295 words) - 15:02, 13 February 2007
  • ...arrive at how your MOD[[can best answer scientists questions, more than a tutorial on how to use your MOD, is of interest. We are expecting a varied audience
    4 KB (599 words) - 01:32, 29 March 2007
  • ...tion, Pathways, Expression Connection, and more.<br /> Gene Ontology: GO Tutorial, What is GO?, GO Slim Mapper, GO Term Finder, and more.<br /> C
    7 KB (948 words) - 19:51, 23 January 2008
  • ...tutorial on testing, see http://search.cpan.org/dist/Test-Simple/lib/Test/Tutorial.pod
    9 KB (1,495 words) - 20:05, 8 October 2012
  • * User tutorial added Tutorial on March 15-18, 2004
    42 KB (6,309 words) - 20:37, 30 November 2010
  • /* Tutorial Headers */
    7 KB (704 words) - 22:25, 25 March 2014
  • | Chado database discussion/tutorial session
    2 KB (244 words) - 01:35, 29 March 2007
  • give a tutorial), and for creating virtual machines that could be used
    3 KB (412 words) - 17:21, 24 September 2009
  • More configuration information and a short tutorial are located at:
    35 KB (5,565 words) - 22:39, 8 August 2012
  • The images from most 2009 [[:Category:Tutorials|Tutorial]] pages include a basic ''{{GlossaryLink|GUI|graphical user interface}}'' c
    3 KB (543 words) - 18:43, 17 September 2012
  • #REDIRECT [[Tripal Tutorial v1.1]]
    97 B (10 words) - 17:44, 12 July 2013
  • This [[:Category:Tutorials|tutorial]] walks you through how to install and configure a [[Chado]] database, Chad ...this course you'll be working with genome annotation data from the [[MAKER Tutorial|MAKER session]]. We'll simplify this and start by considering that we have
    54 KB (8,190 words) - 23:34, 8 October 2012
  • This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2012 GMOD Summe
    50 KB (7,599 words) - 16:26, 2 September 2018
  • ...ly accessible websites]. Galaxy servers make analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available t
    6 KB (748 words) - 19:43, 13 December 2018
  • ...ter is not yet released. (''But it is now: see [[Artemis-Chado Integration Tutorial]].'')
    28 KB (4,093 words) - 05:54, 5 January 2011
  • * a tutorial on [[Galaxy]],
    705 B (100 words) - 23:10, 9 October 2012
  • ...tiple papers with different emphases (for example, [[Chado]] theory, Chado tutorial, and Chado community papers). Please [mailto:scott@scottcain.net contact m
    2 KB (282 words) - 23:08, 9 October 2012
  • ...WebGBrowse comes with [http://webgbrowse.cgb.indiana.edu/tutorial.html a tutorial], [http://webgbrowse.cgb.indiana.edu/faq.html FAQ], and a [[WebGBrowse#Mail
    2 KB (245 words) - 23:14, 9 October 2012
  • [[Category:Tutorial]]
    2 KB (301 words) - 19:41, 18 October 2019
  • ...ere these were used to format the [[Training_and_Outreach#Online_Tutorials|Tutorial pages]].
    16 KB (2,420 words) - 23:18, 8 November 2013
  • |tutorials=;[[GBrowse syn Tutorial]]
    6 KB (800 words) - 21:39, 15 October 2013
  • ...f storing the same biological information. This page is not meant to be a tutorial of how YOU should model your biological information in Chado. Rather, it i
    17 KB (2,330 words) - 23:34, 8 October 2012
  • |tutorials=;[[MAKER Tutorial]]
    9 KB (1,211 words) - 21:53, 2 February 2014
  • See the {{GBrowseAdminTutorialLink|GBrowse Administration Tutorial}} for more details. See the {{GBrowseAdminTutorialLink|tutorial}} for more details.
    79 KB (12,563 words) - 16:45, 15 August 2011
  • .../Generic-Genome-Browser/trunk/htdocs/tutorial/tutorial.html Administrators Tutorial].
    7 KB (1,138 words) - 13:06, 29 September 2010
  • ...visualizing [[synteny]] in up 5 different genomes. This will be a hands-on tutorial on how to install, configure and use GBrowse_syn. == Tutorial Level ==
    3 KB (454 words) - 21:29, 3 October 2012
  • ...emis-Chado Integration Tutorial|Artemis-Chado Integration]], and [[JBrowse Tutorial|JBrowse]]. | style="background-color: #ddffff" align="center" | '''[[Chado Tutorial|Chado]]'''<br />[[User:Scott|Scott Cain]] and [[User:Clements|Dave Clements
    10 KB (1,210 words) - 22:13, 16 April 2014
  • File:OpenHelixLogosmaller.jpg
    .../ OpenHelix], who wrote the [http://www.openhelix.com/gbrowse GBrowse User Tutorial].
    (180 × 79 (19 KB)) - 07:44, 5 February 2009
  • ...art Tutorial|BioMart]], [[GBrowse_syn Tutorial|GBrowse_syn]], and [[Tripal Tutorial|Tripal]] | style="background-color: #ddffff" align="center" | '''[[MAKER Tutorial|MAKER I]]'''<br />[[User:Carsonholt|Carson Holt]]<br />[[MAKER]] overview,
    11 KB (1,433 words) - 22:13, 16 April 2014
  • #redirect [[GBrowse syn Tutorial 2013]]
    117 B (12 words) - 16:02, 22 July 2013
  • ; [[GBrowse Tutorial 2012|GBrowse tutorial from 2013 GMOD Summer School]] : This tutorial was taught by [[User:Scott|Scott Cain]] at the [[2013 GMOD Summer School]]
    2 KB (236 words) - 17:10, 18 December 2013
  • File:NGSWithGMODWorkshop.pdf
    See the [[GBrowse NGS Tutorial]] for how to actually do this.
    (11.08 MB) - 23:10, 3 November 2009
  • ...gured as normal (see the {{GBrowseAdminTutorialLink|GBrowse Administration Tutorial}} and the [[GBrowse Configuration HOWTO]] for details)
    2 KB (386 words) - 15:52, 25 September 2009
  • ...ce (PAG-XVI)], January 12-16, 2008, in San Diego. This will be a hands-on tutorial on how to install and use the [[GBrowse]] genome browser. If you are atten See the [http://www.intl-pag.org/16/16-gbrowse.html PAG tutorial page] for additional information.
    515 B (77 words) - 20:55, 24 January 2011
  • ...ll hold a [http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools tutorial session] from September 2-5, 2008, at SRI International in Menlo Park, CA. ...e see the [http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools Tutorial page] for a detailed schedule, registration information, and other details.
    828 B (116 words) - 21:22, 24 January 2011
  • ...tutorial] well be held September 22-23, 2008 at Kings College London. This tutorial is kindly hosted by the [http://www.kcl.ac.uk/schools/pse/bioinform/ Centre The tutorial is free of charge.
    1 KB (194 words) - 21:26, 24 January 2011
  • ...yotic Annotation Pipeline is also included, as well as a pipeline creation tutorial. For a full list of the changes, see the [http://ergatis.svn.sourceforge.n
    1 KB (164 words) - 21:37, 24 January 2011
  • ...released by [http://www.openhelix.com OpenHelix] this week. The narrated tutorial covers: The tutorial also includes [http://www.openhelix.com/downloads/gbrowse/gbrowseslidesDL.s
    2 KB (268 words) - 23:07, 9 October 2012
  • '''Part 1: Tutorial, August 19-21''' This introductory tutorial will educate the new user on aspects of [[Pathway Tools]] including basic u
    2 KB (297 words) - 23:09, 9 October 2012
  • ...s an extensive [http://webgbrowse.cgb.indiana.edu/webgbrowse/tutorial.html tutorial] and [http://webgbrowse.cgb.indiana.edu/webgbrowse/faq.html FAQ], and was j
    2 KB (292 words) - 23:22, 3 October 2012
  • ...oved along with [[GBrowse_syn|documentation]] and a [[GBrowse_syn Tutorial|tutorial]].
    2 KB (333 words) - 21:56, 24 January 2011

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