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  • ...sbox">Items shown on this page were part of earlier drafts of the [[Galaxy Tutorial 2012|2012 Summer School Galaxy workshop]]. They were moved here either in
    16 KB (2,444 words) - 21:16, 9 October 2012
  • This walks you through setting up and running a [[Galaxy]] server. This tutorial was originally taught by [[User:Clements|Dave Clements]] at the [[2012 GMOD <div class="emphasisbox">See also [http://usegalaxy.org/galaxy101 Galaxy 101 tutorial]</div>
    18 KB (2,654 words) - 22:18, 11 September 2012
  • This [[Has topic::MAKER]] tutorial was taught by [[User:Bmoore|Barry Moore]] as part of the [[2012 GMOD Summer If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm
    80 KB (12,923 words) - 20:52, 27 August 2013
  • #REDIRECT [[GFF Tutorial 2012]]
    90 B (9 words) - 21:04, 11 September 2012
  • If you are 2013 GMOD Summer School, you are on the wrong tutorial.<br> This tutorial on [[GBrowse syn]] was taught by [[User:Mckays|Sheldon McKay]] as part of t
    19 KB (2,685 words) - 17:23, 22 July 2013
  • This [[Has topic::SOBA]] tutorial was taught as part of the [[2012 GMOD Summer School]] and the [[2013 GMOD S
    15 KB (1,830 words) - 20:52, 27 August 2013
  • #REDIRECT [[Artemis-Chado Integration Tutorial]]
    48 B (4 words) - 21:51, 3 October 2012
  • There's a roughly written tutorial on how to create your own data adapter. It covers some information on the
    34 KB (5,278 words) - 22:36, 12 February 2013
  • This [[:Category:Tutorials|tutorial]] walks you through how to install and configure the [[GBrowse_syn]] compar '''Note:''' This tutorial is based on an Ubuntu Linux distribution. File paths and system commands (
    18 KB (2,519 words) - 11:43, 9 January 2013
  • This walks you through setting up and running a [[Galaxy]] server. This tutorial will be taught by [[User:Clements|Dave Clements]] at the [[2013 GMOD Summer ...this tutorial, Galaxy will use port 8081. FTP, which is not used in this tutorial, but is used in Galaxy to upload large files, is on ports 20-21. Update yo
    23 KB (3,328 words) - 23:33, 10 June 2014
  • This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2011 GMOD Sprin
    53 KB (8,083 words) - 20:52, 27 August 2013
  • =Tutorial=
    7 KB (932 words) - 22:50, 13 February 2013
  • 20 KB (2,712 words) - 22:39, 13 February 2013
  • ...can just fire up Galaxy at this point. However, if you are following this tutorial using a [[VMware 2011 Spring Training|VMware]] image from the [[2011 GMOD S ::Note: if you are running this tutorial after the course, pages may be enabled by default in the most current Galax
    38 KB (5,631 words) - 23:56, 13 February 2013
  • ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].
    16 KB (2,345 words) - 00:23, 14 February 2013
  • ==The tutorial data== ~/Documents/Software/intermine/bio/tutorial/malariamine/malaria-data.tar.gz
    43 KB (6,258 words) - 17:56, 14 February 2013
  • 9 KB (1,328 words) - 17:58, 14 February 2013
  • This [[Has topic::MAKER]] tutorial was taught by [[User:Bmoore|Barry Moore]] as part of the [[2011 GMOD Spring
    69 KB (11,026 words) - 20:52, 27 August 2013
  • 15 KB (1,835 words) - 03:36, 24 June 2014
  • ..., these are the file system directories where important components of this tutorial are located ! Tutorial files
    80 KB (12,788 words) - 22:37, 14 February 2013
  • This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2013 GMOD Summe
    50 KB (7,599 words) - 12:36, 20 May 2014
  • This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2013 GMOD Summe
    50 KB (7,595 words) - 12:53, 20 May 2014
  • 12 KB (1,839 words) - 00:11, 20 February 2014
  • This tutorial on [[GBrowse syn]] was taught by [[User:Mckays|Sheldon McKay]] as part of t The starting image for this tutorial is '''2013 GMOD start day 4 (ami-3f7c0456)'''. It can be run as a micro or
    20 KB (2,714 words) - 10:44, 22 May 2014
  • The Tripal v2.0 tutorial is now found at the Tripal website inside of the [http://tripal.info/tutori
    135 B (23 words) - 02:10, 29 August 2014
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the Programming for Biology a This tutorial assumes a Mac OS X computer with apache configured to allow UserDir (~usern
    13 KB (1,909 words) - 19:41, 23 October 2014
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the Programming for Biology a This tutorial assumes a Mac OS X computer with apache configured to allow UserDir (~usern
    18 KB (2,519 words) - 23:33, 19 October 2015
  • ==Tutorial AMI==
    19 KB (2,557 words) - 14:38, 19 May 2014
  • {{Tutorial Info
    14 KB (1,931 words) - 00:01, 20 February 2014
  • {{Tutorial Info If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm
    85 KB (13,463 words) - 00:56, 27 February 2014
  • This [[Has topic::InterMine]] tutorial was presented by NAME at the [[GMOD Malaysia 2014]] in February 2014 using This tutorial uses the AWS AMI '''ID''' named '''NAME''' in the AWS REGION.
    279 B (38 words) - 22:41, 19 February 2014
  • {{Tutorial Info
    233 B (28 words) - 23:58, 19 February 2014
  • {{Tutorial Info
    12 KB (1,863 words) - 00:15, 20 February 2014
  • {{Tutorial Info ...allation, usage and administration of a Tripal-based genome website. This tutorial guides the user through the process of installation, setup and data loading
    131 KB (21,099 words) - 00:18, 20 February 2014
  • {{Tutorial Info
    51 KB (7,657 words) - 00:19, 20 February 2014
  • {{Tutorial Info
    240 B (28 words) - 00:21, 20 February 2014
  • {{Tutorial Info ...ill use shared servers provided by the Galaxy Project for this part of the tutorial. We'll finish with each person setting up their own Galaxy server on the A
    605 B (82 words) - 13:54, 26 February 2014
  • 6 KB (1,003 words) - 00:09, 28 February 2014
  • ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].
    16 KB (2,318 words) - 04:56, 19 May 2014
  • If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm ...discuss these options in more detail later on. if you are following this tutorial outside of class adjust the following values in a text editor.
    80 KB (12,952 words) - 03:53, 19 May 2014
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the [[PAG|Plant and Animal Ge ...s an Ubuntu 15.04 [https://s3.amazonaws.com/jbrowse-tutorials/JBrowse+2016+tutorial.ova.bz2 VirtualBox appliance] (2.7 GB) that was distributed before the cour
    19 KB (2,697 words) - 06:25, 13 January 2016
  • 13 KB (1,905 words) - 14:21, 21 May 2014
  • This tutorial on [[GBrowse syn]] was taught by [[User:Mckays|Sheldon McKay]] as part of t The starting image for this tutorial is '''GMOD 2014 online school - ami-907e97f8'''. It can be run as a micro
    20 KB (2,751 words) - 19:05, 22 May 2014
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the [[PAG|Plant and Animal Ge ...an Ubuntu 14.04.1 [https://s3.amazonaws.com/jbrowse-tutorials/JBrowse+PAG+tutorial.ova.bz2 VirtualBox appliance] (2.3 GB) that was distributed before the cour
    19 KB (2,615 words) - 16:21, 11 January 2015
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the Programming for Biology a ..., with the security group modified to allow http connections, and with the tutorial bundle zip file, also available on Amazon S3: [https://s3.amazonaws.com/jbr
    20 KB (2,903 words) - 19:59, 16 October 2016
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the [http://www.intlpag.org P ...s a [https://www.virtualbox.org VirtualBox] Ubuntu 16.10 instance with the tutorial bundle zip file, also available on Amazon S3: [https://s3.amazonaws.com/jbr
    20 KB (2,867 words) - 19:38, 15 January 2017
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the [http://www.intlpag.org P ...[https://www.virtualbox.org VirtualBox] Ubuntu 16.04 LTS instance with the tutorial bundle zip file, also available on Amazon S3: [https://s3.amazonaws.com/jbr
    21 KB (2,962 words) - 05:00, 14 January 2018
  • This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the [http://www.intlpag.org P ...ttps://www.virtualbox.org VirtualBox] Ubuntu 18.04 (LTS) instance with the tutorial bundle zip file, also available on Amazon S3: [https://s3.amazonaws.com/jbr
    22 KB (3,098 words) - 21:05, 13 January 2019

Page text matches

  • * Support for [[GBrowse NGS Tutorial|next generation sequencing]] data.
    2 KB (359 words) - 23:25, 9 October 2012
  • ...on how to setup the component on that image. This year we have a [[Galaxy Tutorial]] for the first time. * '''[[Apollo Tutorial]]''' - by [[User:Elee|Ed Lee]]
    1 KB (223 words) - 23:09, 9 October 2012
  • |tutorials=;[[JBrowse Tutorial]] covering installation and configuration ...browse.org/code/latest-release/docs/tutorial/ Getting Started with JBrowse Tutorial]
    8 KB (1,157 words) - 19:18, 15 April 2016
  • This was be a hands-on tutorial on how to install and use the [[GBrowse]] genome browser. == Tutorial Level ==
    3 KB (431 words) - 19:34, 3 October 2012
  • * If you are not familiar with Django, start reading the tutorial at http://docs.djangoproject.com (stable) or http://www.djangoproject.com/d ...s/ (a MUST READ if you are not familiar with the Django framework, try the tutorial)
    16 KB (2,412 words) - 18:11, 9 October 2012
  • See the {{GBrowseAdminTutorialLink|GBrowse Tutorial}} for more details.
    101 KB (15,507 words) - 04:44, 9 January 2014
  • ...tp://www.openhelix.com OpenHelix] later this month. This is a Flash based tutorial that goes into great detail on how to use GBrowse's basic and advanced user * Include a tutorial for first time users.
    50 KB (7,612 words) - 18:53, 8 October 2012
  • ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].
    16 KB (2,336 words) - 19:49, 10 September 2012
  • ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].
    16 KB (2,387 words) - 22:13, 11 February 2014
  • ! [[GBrowse NGS Tutorial]] | Step by step tutorial on configuring [[GBrowse]] 2 to visualize NGS data using the [http://samtoo
    3 KB (450 words) - 00:52, 18 November 2010
  • #REDIRECT [[GBrowse syn Tutorial]]
    34 B (4 words) - 23:38, 25 July 2012
  • ; [[GBrowse NGS Tutorial]] ...(NGS) data in [[GBrowse]] is now available as a GMOD [[:Category:Tutorials|tutorial]], complete with a starting [[VMware]] image.
    4 KB (456 words) - 18:52, 8 October 2012
  • #REDIRECT [[MAKER Tutorial 2013]]
    76 B (7 words) - 23:34, 29 July 2013
  • #REDIRECT [[WebApollo Tutorial 2013]]
    84 B (7 words) - 23:35, 29 July 2013
  • This [[:Category:Tutorials|tutorial]] walks you through setting up and running a [[JBrowse]] server. ...latfile-to-json.pl</tt>. We'll use some more of the data from the [[MAKER Tutorial|MAKER session]]:
    9 KB (1,327 words) - 22:46, 3 October 2012
  • #REDIRECT [[JBrowse Tutorial 2013]]
    112 B (10 words) - 16:02, 22 July 2013
  • If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm ...discuss these options in more detail later on. if you are following this tutorial outside of class adjust the following values in a text editor.
    80 KB (12,961 words) - 23:47, 29 July 2013
  • This [[:Category:Tutorials|tutorial]] walks you through how to use the Artemis annotation editor with a [[Chado ...this is included for completeness only and you should refer to the [[Chado Tutorial|Chado session]] for more details on this.
    17 KB (2,626 words) - 23:33, 8 October 2012
  • #REDIRECT [[Galaxy Tutorial 2013]]
    78 B (7 words) - 23:35, 29 July 2013
  • ...but Artemis does work with [[Chado]] (see the [[Artemis-Chado Integration Tutorial]]), and the Artemis group is working closely with [[Apollo]] developers on
    1 KB (161 words) - 18:52, 8 October 2012
  • This will be a hands-on tutorial on how to install and use the [[GBrowse]] genome browser. == Tutorial Level ==
    2 KB (328 words) - 18:52, 8 October 2012
  • == Tutorial Level == The tutorial is aimed at biologists who have, or soon will have, genomic sequence data.
    3 KB (468 words) - 18:54, 8 October 2012
  • == Tutorial Level == The tutorial is aimed at computer-savvy biologists and computer scientists working with
    2 KB (362 words) - 18:52, 8 October 2012
  • #REDIRECT [[Apollo Tutorial 2011]]
    78 B (7 words) - 22:30, 12 February 2013
  • #REDIRECT [[Chado Tutorial 2013]]
    76 B (7 words) - 15:52, 17 July 2013
  • Back to [[Chado Tutorial]].
    1 KB (180 words) - 05:19, 30 September 2009
  • #REDIRECT [[JBrowse Tutorial 2013]]
    80 B (7 words) - 23:35, 29 July 2013
  • ...ion Documentation''' - e.g. [[GBrowse Configuration HOWTO]], [[GBrowse_syn Tutorial]], ... ...e User Tutorial], [http://www.gramene.org/tutorials/cmap_tutorial.pdf CMap Tutorial], ...
    26 KB (3,948 words) - 17:18, 6 October 2009
  • This [[:Category:Tutorials|tutorial]] walks you through how to configure the [[GBrowse]] genome browser to disp This tutorial was taught using a [[VMware]] system image as a starting point. If you wan
    38 KB (5,742 words) - 18:11, 9 October 2012
  • #REDIRECT [[GBrowse Tutorial]]
    30 B (3 words) - 19:49, 22 October 2009
  • | style="background-color: #ddffff" align="center" | '''[[MAKER Tutorial|MAKER I]]'''<br />[[User:Carsonholt|Carson Holt]]<br />[[MAKER]] overview, | style="background-color: #ddffff" align="center" | '''[[MAKER Tutorial|MAKER II]]'''<br />[[User:Carsonholt|Carson Holt]]<br />Advanced [[MAKER]]
    13 KB (1,782 words) - 22:14, 16 April 2014
  • ...stall and configure the [[GBrowse_syn]] comparative genomics viewer. This tutorial was originally taught by [[User:Mckays|Sheldon McKay]] at the 2009 [[GMOD S | valign="top" |This tutorial was taught using a [[VMware]] system image as a starting point. If you wan
    19 KB (2,507 words) - 18:53, 8 October 2012
  • volvox Volvox Tutorial Database
    6 KB (982 words) - 15:29, 27 August 2012
  • ...ser in use today, with several hundred servers around the world. For this tutorial, we created a server at http://gbrowse.gmod.org/gbrowse2, and specifically, In the morning section of the tutorial, we created GFF (not GFF3), so we'll use that as an example of how to uploa
    17 KB (2,763 words) - 18:52, 8 October 2012
  • ...ls=;[http://webgbrowse.cgb.indiana.edu/webgbrowse/tutorial.html WebGBrowse Tutorial] :An extensive user guide and tutorial
    4 KB (530 words) - 21:26, 16 October 2013
  • * a tutorial on [[Galaxy]],
    7 KB (1,006 words) - 01:23, 3 October 2012
  • ...WebGBrowse comes with extensive help embedded in the forms and includes a tutorial. Users can preview their changes at any point in GBrowse. WebGBrowse make
    100 KB (14,725 words) - 17:31, 30 November 2012
  • == A Tutorial == We start out with a short tutorial that illustrates how GBrowse DAS support works.
    6 KB (947 words) - 20:15, 8 July 2010
  • ...ndexed BAM files via the URL interface. See [[GBrowse_NGS_Tutorial]] for a tutorial on configuration.
    23 KB (3,672 words) - 14:44, 10 July 2013
  • ...and [[GBrowse_syn]]. The workshop was in addition to the hands-on GBrowse tutorial that is offered every year. As in past years (see [[PAG 2010]] and [[PAG 2
    11 KB (1,443 words) - 19:19, 4 September 2013
  • ...lso discussed the UCSC Cancer Genome Browser, and walked through the video tutorial. There was much discussion on gene sets, and viewing regions that have man
    12 KB (1,865 words) - 18:54, 8 October 2012
  • |tutorials=;[[WebApollo Tutorial]]
    4 KB (536 words) - 20:37, 6 April 2015
  • * [[Apollo Tutorial]] * [[Chado Tutorial]]
    11 KB (1,481 words) - 22:14, 16 April 2014
  • A remote online attendance option for the tutorial is available.
    1,011 B (149 words) - 05:24, 5 May 2011
  • ...Genome Consortium (ICGC) Data Portal (http://dcc.icgc.org), and a hands-on tutorial to show how to create and configure a local data mart, how to import extern Requirements: Parts of the tutorial will be taught using a VirtualBox Open Virtualization Appliance (OVA) image
    13 KB (1,892 words) - 18:54, 8 October 2012
  • ;[[WebApollo Tutorial]]
    5 KB (636 words) - 20:34, 15 October 2013
  • There's a roughly written tutorial on how to create your own data adapter. It covers some information on the
    34 KB (5,242 words) - 00:21, 14 February 2013
  • '''The most recent version of this tutorial is available at the [[Tripal Tutorial]] page.''' ...ent in the screen shots but will appear in the live version. However, the tutorial is still quite useful for learning to use Tripal v0.3b.
    80 KB (12,830 words) - 20:41, 2 October 2012
  • #REDIRECT [[SOBA Tutorial 2012]]
    74 B (7 words) - 23:37, 29 July 2013
  • and create a free account (I created one for this tutorial with a user name of gmodags). After that is created, we can upload some sa ...l be set up with fairly unrestricted access to make life easier during the tutorial. If used "in real life", the configuration should be tightened down quite
    15 KB (2,338 words) - 18:52, 8 October 2012

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