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  • ...used to build the database, database dumps at a few steps of building the database, and an [[Apollo]] <tt>chado-adaptor.xml</tt> config file in the {{SF_SVN|s
    587 B (98 words) - 21:08, 15 September 2009
  • ...This project was developed from ATIDB, the Arabidopsis thaliana insertion database. : See [http://atidb.cshl.org/ http://atidb.cshl.org] for a database of Arabidopsis insertional mutants.
    1 KB (150 words) - 07:22, 30 January 2008
  • ...e:DatabaseJournal.jpg|link=http://database.oxfordjournals.org/|300px|right|Database: The Journal of Biological Databases and Curation]] ...h one of the editors of the journal [http://database.oxfordjournals.org/ ''Database''], an open access journal whose aim for publications lines up very nicely
    2 KB (282 words) - 23:08, 9 October 2012
  • [[File:SpBaseLogo.png|link=http://spbase.org/|right|Sea Urchin Genome Database]] Today, Tuesday April 4th, the [http://spbase.org Sea Urchin Genome Database] went public. Based on the GMOD tools and applications the site organizes
    787 B (118 words) - 23:09, 9 October 2012
  • ...tabases and resources]" appeared in ''[http://database.oxfordjournals.org/ Database: The Journal of Biological Databases and Curation]''. ...proboards.com/index.cgi?board=fundingissues discussion thread on long term database funding] has now been started on the [http://biocurator.org International S
    3 KB (395 words) - 23:09, 9 October 2012
  • ...the database that GBrowse_syn uses, and how to get syntenic data into that database. =Loading the alignment database=
    7 KB (897 words) - 21:27, 14 August 2012
  • 51 B (6 words) - 14:27, 29 March 2013
  • [[GBrowse]] has the option to use a database to manage users, so that a user may save their session for use on multiple To use the user database, you will need to install the [http://search.cpan.org/~gbarr/libnet-1.22/Ne
    7 KB (1,094 words) - 22:41, 29 December 2010
  • 101 B (11 words) - 15:54, 1 April 2013
  • #REDIRECT [[JBrowseDev/Using a Database With JBrowse]]
    54 B (7 words) - 17:31, 29 July 2011
  • I am very pleased to announce the publication of the DATABASE special issue dedicated to the [http://www.biomart.org/ BioMart] project ...ast ten years to become what it is today, a collaboration between numerous database projects on five continents: Asia, Australia, Europe, North America and Sou
    949 B (135 words) - 04:25, 19 November 2011
  • 40 B (6 words) - 19:41, 17 April 2012
  • '''[http://www.xenbase.org Xenbase] is looking for a new database manager.''' We need an experienced software developer / designer looking fo Xenbase is the model organism database for Xenopus, a frog used extensively in biomedical research for understandi
    4 KB (523 words) - 00:27, 21 August 2012

Page text matches

  • ...ough GMOD uses the [[Chado]] [[Glossary#Schema|schema]] for its underlying database, each group has developed a separate interface to their databases. This mee ...approaches and components that it supports. This applies to applications, database schemas, as well as to middleware, a software ''layer'' that mediates the e
    40 KB (5,672 words) - 21:27, 15 August 2013
  • * GeneDB is the organism data and annotation database for the Pathogen Sequencing Unit (PSU) at the Sanger Institute, UK * Connection to the database is specified graphically, so the '''iBatis''' configuration file has varia
    4 KB (513 words) - 21:16, 9 October 2012
  • ** Wrote Ensembl API Database adaptor for Chado... Not maintainable. * Need API for Database I/O
    12 KB (1,477 words) - 21:16, 9 October 2012
  • * iBatis does not create your database in memory as objects * Generates ibatis CRUD objects by introspecting database tables
    12 KB (1,304 words) - 21:10, 9 October 2012
  • =====Create the database===== ** Database connection object
    3 KB (415 words) - 20:05, 8 October 2012
  • * Database transactions supported # Inserts chromosome into database
    13 KB (1,574 words) - 21:24, 15 August 2013
  • ...ratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at [[MOD|many large and small community databases]]. [[File:ChadoLogo.png|250px|thumb|none|link=Chado|Chado: Biological database schema]]
    5 KB (651 words) - 18:22, 30 March 2021
  • ...tional database, it should be able to interact with a Chado database via a database adaptor.
    6 KB (985 words) - 05:18, 28 January 2008
  • Chado is a [[Glossary#Database Schema|relational database schema]] that underlies [[GMOD_Users|many GMOD installations]]. It is capab First you will need database software, or Relational Database Management System (RDBMS). The recommended RDBMS for Chado currently is [ht
    3 KB (469 words) - 18:08, 13 February 2014
  • ...called DBIx::DBStag, which does the actual writing of ontology data to the database. When it loads the Gene Ontology (and possibly other ontologies), it destr : Instead, you must run a SQL command to repair the database:
    6 KB (1,058 words) - 17:50, 5 February 2014
  • Reading and Writing to a Chado database with Apollo vocabulary terms that Apollo expects to be in the database. This
    4 KB (635 words) - 18:06, 28 December 2007
  • |type=Genome Visualization & Editing, Comparative Genome Visualization, Database schema * A relational database, e.g. [http://www.mysql.com MySQL (4.0+)], Sybase Adaptive Server Enterpris
    7 KB (996 words) - 23:40, 17 October 2013
  • ...database instance. In the past, due to its primary use at TIGR/JCVI, the database support was limited to Sybase, though flat-files could also be generated.
    2 KB (354 words) - 23:49, 25 July 2012
  • The Rat Genome Database has an SVG-based genome viewer that shows the location of genes and QTLs ag ...tation XML files or create a CGI/JSP script that retrieves the data from a database. Details of the various file formats are given below.
    30 KB (4,819 words) - 21:16, 9 October 2012
  • |about=GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on ge ...nly for applications where legacy browser support is required and a single database is used.
    11 KB (1,422 words) - 16:47, 10 April 2023
  • ...-_Getting_Started|Getting Started with Chado]] discusses GMOD's relational database schema. Chado is useful for organizing your data and is also integrated wi
    1 KB (240 words) - 20:32, 15 September 2009
  • A proposed database module for Chado. * The community module uses a relational database, a Servlets and JSP engine, and the Struts Web application framework.
    2 KB (254 words) - 00:52, 18 November 2010
  • ...rom several Chado dbs, and add other sources that may not be in your Chado database. * each genome Chado database has different policy and choices with respect to feature, vocabulary and ot
    10 KB (1,496 words) - 23:00, 15 August 2013
  • '''During the meeting it was suggested that we have a common database against which to test software. A first step would be to provide Postgres d Allen Day suggested that he will provide a Postgres dump of the database for human, yeast and mouse.
    2 KB (257 words) - 15:02, 13 February 2007
  • ...t up by hand but the JBOSS Eclipse IDE has a nice tool that will read your database schema and generate them for you. This is also the first place we encounter ...s file that describes your schema matches the actual schema that is in the database. Once that is done all you need to do is write a dumpspec to dump the data
    9 KB (1,641 words) - 15:48, 12 September 2011

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