Search results
Create the page "Tutorial" on this wiki! See also the search results found.
Page title matches
- #REDIRECT [[Tripal Tutorial v1.1]]97 B (10 words) - 17:44, 12 July 2013
- This [[:Category:Tutorials|tutorial]] walks you through how to install and configure a [[Chado]] database, Chad ...this course you'll be working with genome annotation data from the [[MAKER Tutorial|MAKER session]]. We'll simplify this and start by considering that we have54 KB (8,190 words) - 23:34, 8 October 2012
- This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2012 GMOD Summe50 KB (7,599 words) - 16:26, 2 September 2018
-
77 KB (11,812 words) - 00:39, 21 May 2014
- #redirect [[GBrowse syn Tutorial 2013]]117 B (12 words) - 16:02, 22 July 2013
- ; [[GBrowse Tutorial 2012|GBrowse tutorial from 2013 GMOD Summer School]] : This tutorial was taught by [[User:Scott|Scott Cain]] at the [[2013 GMOD Summer School]]2 KB (236 words) - 17:10, 18 December 2013
- ...ce (PAG-XVI)], January 12-16, 2008, in San Diego. This will be a hands-on tutorial on how to install and use the [[GBrowse]] genome browser. If you are atten See the [http://www.intl-pag.org/16/16-gbrowse.html PAG tutorial page] for additional information.515 B (77 words) - 20:55, 24 January 2011
- ...ll hold a [http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools tutorial session] from September 2-5, 2008, at SRI International in Menlo Park, CA. ...e see the [http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools Tutorial page] for a detailed schedule, registration information, and other details.828 B (116 words) - 21:22, 24 January 2011
- ...tutorial] well be held September 22-23, 2008 at Kings College London. This tutorial is kindly hosted by the [http://www.kcl.ac.uk/schools/pse/bioinform/ Centre The tutorial is free of charge.1 KB (194 words) - 21:26, 24 January 2011
- ...released by [http://www.openhelix.com OpenHelix] this week. The narrated tutorial covers: The tutorial also includes [http://www.openhelix.com/downloads/gbrowse/gbrowseslidesDL.s2 KB (268 words) - 23:07, 9 October 2012
- [[File:BA2009Logo.png|link=GBrowse NGS Tutorial|100px|right|GBrowse NGS Tutorial]] ...the [[BA2009|Bioinformatics Australia 2009 (BA2009) GMOD Workshop]]. The tutorial includes a [[VMware]] image to work with and step-by-step instructions for1 KB (156 words) - 23:10, 9 October 2012
- ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].16 KB (2,387 words) - 22:13, 11 February 2014
- #REDIRECT [[MAKER Tutorial 2013]]76 B (7 words) - 23:34, 29 July 2013
- #REDIRECT [[WebApollo Tutorial 2013]]84 B (7 words) - 23:35, 29 July 2013
- This [[:Category:Tutorials|tutorial]] walks you through setting up and running a [[JBrowse]] server. ...latfile-to-json.pl</tt>. We'll use some more of the data from the [[MAKER Tutorial|MAKER session]]:9 KB (1,327 words) - 22:46, 3 October 2012
- #REDIRECT [[JBrowse Tutorial 2013]]112 B (10 words) - 16:02, 22 July 2013
- If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm ...discuss these options in more detail later on. if you are following this tutorial outside of class adjust the following values in a text editor.80 KB (12,961 words) - 23:47, 29 July 2013
- This [[:Category:Tutorials|tutorial]] walks you through how to use the Artemis annotation editor with a [[Chado ...this is included for completeness only and you should refer to the [[Chado Tutorial|Chado session]] for more details on this.17 KB (2,626 words) - 23:33, 8 October 2012
- #REDIRECT [[Galaxy Tutorial 2013]]78 B (7 words) - 23:35, 29 July 2013
- #REDIRECT [[Apollo Tutorial 2011]]78 B (7 words) - 22:30, 12 February 2013
- #REDIRECT [[Chado Tutorial 2013]]76 B (7 words) - 15:52, 17 July 2013
-
199 B (27 words) - 21:41, 2 October 2012
- #REDIRECT [[JBrowse Tutorial 2013]]80 B (7 words) - 23:35, 29 July 2013
- This [[:Category:Tutorials|tutorial]] walks you through how to configure the [[GBrowse]] genome browser to disp This tutorial was taught using a [[VMware]] system image as a starting point. If you wan38 KB (5,742 words) - 18:11, 9 October 2012
- #REDIRECT [[GBrowse Tutorial]]30 B (3 words) - 19:49, 22 October 2009
-
367 B (55 words) - 19:04, 14 November 2009
-
34 KB (5,308 words) - 22:03, 3 October 2012
- ...stall and configure the [[GBrowse_syn]] comparative genomics viewer. This tutorial was originally taught by [[User:Mckays|Sheldon McKay]] at the 2009 [[GMOD S | valign="top" |This tutorial was taught using a [[VMware]] system image as a starting point. If you wan19 KB (2,507 words) - 18:53, 8 October 2012
- A remote online attendance option for the tutorial is available.1,011 B (149 words) - 05:24, 5 May 2011
- There's a roughly written tutorial on how to create your own data adapter. It covers some information on the34 KB (5,242 words) - 00:21, 14 February 2013
- '''The most recent version of this tutorial is available at the [[Tripal Tutorial]] page.''' ...ent in the screen shots but will appear in the live version. However, the tutorial is still quite useful for learning to use Tripal v0.3b.80 KB (12,830 words) - 20:41, 2 October 2012
- #REDIRECT [[SOBA Tutorial 2012]]74 B (7 words) - 23:37, 29 July 2013
-
21 KB (2,890 words) - 22:24, 3 October 2012
-
23 KB (3,325 words) - 20:52, 3 October 2012
- ...for your server you will need to manually convert the paths shown in this tutorial to wherever your Apache document root may reside. ...When possible, alternative command-line statements have been added to this tutorial as users of other Linux version have provided feedback. Unless specificall92 KB (14,708 words) - 23:27, 5 September 2012
-
153 B (22 words) - 19:57, 5 August 2011
File:Web apollo 2012 tutorial track list json.zip (825 B) - 22:37, 5 September 2012- This [[Has topic::WebApollo]] tutorial was presented by [[User:Elee|Ed Lee]] at the [[2012 GMOD Summer School]]. ...bApollo was not officially released when this session was taught, and this tutorial was run using a beta version of the tool.'''43 KB (6,301 words) - 20:52, 27 August 2013
- ...allation, usage and administration of a Tripal-based genome website. This tutorial guides the user through the process of installation, setup and data loading ...When possible, alternative command-line statements have been added to this tutorial as users of other Linux version have provided feedback. Unless specificall131 KB (21,091 words) - 21:53, 2 January 2014
- This tutorial is intended to be used with the Virtual Machine Image that comes pre-instal ...t we can skip large sections as the VM has already been prepared. For this tutorial, follow these steps:2 KB (375 words) - 23:28, 5 September 2012
- #REDIRECT [[BioMart Tutorial]]52 B (5 words) - 05:08, 11 November 2011
- Welcome to the [[Tripal]] v1.0 Tutorial. Here you will find instructions for installation, usage and administratio <font color="red">'''Note:''' An updated tutorial for Tripal v1.1 can be found [http://www.gmod.org/wiki/Tripal_Tutorial_v1.199 KB (16,007 words) - 17:43, 12 July 2013
- Registration for the GBrowse tutorial at ASPB is now closed, with 97 registered attendees. ...od"; the password for that user is also gmod, which we may need during the tutorial.3 KB (527 words) - 00:06, 12 September 2012
- ...B::Sam must be installed. This is based on the [[GBrowse_NGS_Tutorial|NGS tutorial]] that Dave Clements wrote. ...am.gz|SAM file]] and save in the GBrowse database directory for the volvox tutorial. Also make sure that the volvox fasta file, volvox.fa, is in the directory5 KB (853 words) - 00:19, 23 October 2012
- ...g and configuring [[Tripal]], a web front end to [[Chado]] databases. This tutorial references (and complements) the [[Media:TripalUsersGuideJan2010.pdf|Tripal58 KB (8,529 words) - 18:12, 9 October 2012
- This [[Has topic::JBrowse]] tutorial was presented by [[User:RobertBuels|Robert Buels]] at the [[2013 GMOD Summe This tutorial uses the AWS AMI '''ami-d2c8b1bb''' named '''2013 GMOD start day 3''' in th14 KB (1,948 words) - 20:48, 27 August 2013
- For the moment, [http://tomotvos.ca/cloud/how-to-resize-an-aws-volume/ this tutorial] is a good guide to resizing EBS partitions on EC2 machines.8 KB (1,350 words) - 01:26, 13 September 2012
- The following tutorial was presented as part of the [[2011 GMOD Spring Training]].15 KB (1,843 words) - 23:03, 20 August 2012
- This tutorial on [[GFF]] was given by [[User:Scott|Scott Cain]] at the [[2012 GMOD Summer ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information.16 KB (2,352 words) - 21:54, 11 September 2012
- This [[:Category:Tutorials|tutorial]] walks you through setting up and running a [[Galaxy]] server. ...ttp://bitbucket.org/galaxy/galaxy-central/wiki/ExternalDisplayApplications/Tutorial You can customize what external applications are available for displaying d32 KB (4,846 words) - 21:16, 9 October 2012
- ==Tutorial==3 KB (525 words) - 21:38, 2 October 2012
- This [[Has topic::GBrowse]] tutorial was taught at the [[2012 GMOD Summer School]] by [[User:Scott|Scott Cain]]. ==Tutorial==8 KB (1,132 words) - 20:52, 27 August 2013
- This [[:Category:Tutorials|tutorial]] walks you through setting up and running the [[MAKER]] genome annotation62 KB (9,933 words) - 22:41, 14 February 2013
- ...sbox">Items shown on this page were part of earlier drafts of the [[Galaxy Tutorial 2012|2012 Summer School Galaxy workshop]]. They were moved here either in16 KB (2,444 words) - 21:16, 9 October 2012
- This walks you through setting up and running a [[Galaxy]] server. This tutorial was originally taught by [[User:Clements|Dave Clements]] at the [[2012 GMOD <div class="emphasisbox">See also [http://usegalaxy.org/galaxy101 Galaxy 101 tutorial]</div>18 KB (2,654 words) - 22:18, 11 September 2012
- This [[Has topic::MAKER]] tutorial was taught by [[User:Bmoore|Barry Moore]] as part of the [[2012 GMOD Summer If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm80 KB (12,923 words) - 20:52, 27 August 2013
- #REDIRECT [[GFF Tutorial 2012]]90 B (9 words) - 21:04, 11 September 2012
- If you are 2013 GMOD Summer School, you are on the wrong tutorial.<br> This tutorial on [[GBrowse syn]] was taught by [[User:Mckays|Sheldon McKay]] as part of t19 KB (2,685 words) - 17:23, 22 July 2013
- This [[Has topic::SOBA]] tutorial was taught as part of the [[2012 GMOD Summer School]] and the [[2013 GMOD S15 KB (1,830 words) - 20:52, 27 August 2013
- #REDIRECT [[Artemis-Chado Integration Tutorial]]48 B (4 words) - 21:51, 3 October 2012
- There's a roughly written tutorial on how to create your own data adapter. It covers some information on the34 KB (5,278 words) - 22:36, 12 February 2013
- This [[:Category:Tutorials|tutorial]] walks you through how to install and configure the [[GBrowse_syn]] compar '''Note:''' This tutorial is based on an Ubuntu Linux distribution. File paths and system commands (18 KB (2,519 words) - 11:43, 9 January 2013
- This walks you through setting up and running a [[Galaxy]] server. This tutorial will be taught by [[User:Clements|Dave Clements]] at the [[2013 GMOD Summer ...this tutorial, Galaxy will use port 8081. FTP, which is not used in this tutorial, but is used in Galaxy to upload large files, is on ports 20-21. Update yo23 KB (3,328 words) - 23:33, 10 June 2014
- This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2011 GMOD Sprin53 KB (8,083 words) - 20:52, 27 August 2013
- =Tutorial=7 KB (932 words) - 22:50, 13 February 2013
-
20 KB (2,712 words) - 22:39, 13 February 2013
- ...can just fire up Galaxy at this point. However, if you are following this tutorial using a [[VMware 2011 Spring Training|VMware]] image from the [[2011 GMOD S ::Note: if you are running this tutorial after the course, pages may be enabled by default in the most current Galax38 KB (5,631 words) - 23:56, 13 February 2013
- ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].16 KB (2,345 words) - 00:23, 14 February 2013
- ==The tutorial data== ~/Documents/Software/intermine/bio/tutorial/malariamine/malaria-data.tar.gz43 KB (6,258 words) - 17:56, 14 February 2013
-
9 KB (1,328 words) - 17:58, 14 February 2013
- This [[Has topic::MAKER]] tutorial was taught by [[User:Bmoore|Barry Moore]] as part of the [[2011 GMOD Spring69 KB (11,026 words) - 20:52, 27 August 2013
-
15 KB (1,835 words) - 03:36, 24 June 2014
- ..., these are the file system directories where important components of this tutorial are located ! Tutorial files80 KB (12,788 words) - 22:37, 14 February 2013
- This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2013 GMOD Summe50 KB (7,599 words) - 12:36, 20 May 2014
- This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2013 GMOD Summe50 KB (7,595 words) - 12:53, 20 May 2014
-
12 KB (1,839 words) - 00:11, 20 February 2014
- This tutorial on [[GBrowse syn]] was taught by [[User:Mckays|Sheldon McKay]] as part of t The starting image for this tutorial is '''2013 GMOD start day 4 (ami-3f7c0456)'''. It can be run as a micro or20 KB (2,714 words) - 10:44, 22 May 2014
- The Tripal v2.0 tutorial is now found at the Tripal website inside of the [http://tripal.info/tutori135 B (23 words) - 02:10, 29 August 2014
- This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the Programming for Biology a This tutorial assumes a Mac OS X computer with apache configured to allow UserDir (~usern13 KB (1,909 words) - 19:41, 23 October 2014
- This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the Programming for Biology a This tutorial assumes a Mac OS X computer with apache configured to allow UserDir (~usern18 KB (2,519 words) - 23:33, 19 October 2015
- ==Tutorial AMI==19 KB (2,557 words) - 14:38, 19 May 2014
- {{Tutorial Info14 KB (1,931 words) - 00:01, 20 February 2014
- {{Tutorial Info If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm85 KB (13,463 words) - 00:56, 27 February 2014
- This [[Has topic::InterMine]] tutorial was presented by NAME at the [[GMOD Malaysia 2014]] in February 2014 using This tutorial uses the AWS AMI '''ID''' named '''NAME''' in the AWS REGION.279 B (38 words) - 22:41, 19 February 2014
- {{Tutorial Info233 B (28 words) - 23:58, 19 February 2014
- ...esented by {{{who}}} at {{{where}}}, {{{when}}}. {{#if:{{{version|}}}|This tutorial requires {{{what}}} version {{{version}}}.|}} The most recent {{{what}}} tutorial can be found at the [[{{{what}}} Tutorial]] page.363 B (44 words) - 23:54, 19 February 2014
- {{Tutorial Info12 KB (1,863 words) - 00:15, 20 February 2014
- {{Tutorial Info ...allation, usage and administration of a Tripal-based genome website. This tutorial guides the user through the process of installation, setup and data loading131 KB (21,099 words) - 00:18, 20 February 2014
- {{Tutorial Info51 KB (7,657 words) - 00:19, 20 February 2014
- {{Tutorial Info240 B (28 words) - 00:21, 20 February 2014
- {{Tutorial Info ...ill use shared servers provided by the Galaxy Project for this part of the tutorial. We'll finish with each person setting up their own Galaxy server on the A605 B (82 words) - 13:54, 26 February 2014
-
6 KB (1,003 words) - 00:09, 28 February 2014
- ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].16 KB (2,318 words) - 04:56, 19 May 2014
- If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm ...discuss these options in more detail later on. if you are following this tutorial outside of class adjust the following values in a text editor.80 KB (12,952 words) - 03:53, 19 May 2014
- This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the [[PAG|Plant and Animal Ge ...s an Ubuntu 15.04 [https://s3.amazonaws.com/jbrowse-tutorials/JBrowse+2016+tutorial.ova.bz2 VirtualBox appliance] (2.7 GB) that was distributed before the cour19 KB (2,697 words) - 06:25, 13 January 2016
-
13 KB (1,905 words) - 14:21, 21 May 2014
- This tutorial on [[GBrowse syn]] was taught by [[User:Mckays|Sheldon McKay]] as part of t The starting image for this tutorial is '''GMOD 2014 online school - ami-907e97f8'''. It can be run as a micro20 KB (2,751 words) - 19:05, 22 May 2014
- This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the [[PAG|Plant and Animal Ge ...an Ubuntu 14.04.1 [https://s3.amazonaws.com/jbrowse-tutorials/JBrowse+PAG+tutorial.ova.bz2 VirtualBox appliance] (2.3 GB) that was distributed before the cour19 KB (2,615 words) - 16:21, 11 January 2015
- This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the Programming for Biology a ..., with the security group modified to allow http connections, and with the tutorial bundle zip file, also available on Amazon S3: [https://s3.amazonaws.com/jbr20 KB (2,903 words) - 19:59, 16 October 2016
- This [[Has topic::JBrowse]] tutorial was presented by [[User:Scott|Scott Cain]] at the [http://www.intlpag.org P ...s a [https://www.virtualbox.org VirtualBox] Ubuntu 16.10 instance with the tutorial bundle zip file, also available on Amazon S3: [https://s3.amazonaws.com/jbr20 KB (2,867 words) - 19:38, 15 January 2017
Page text matches
- ...his eventually became what is described in the [[Artemis-Chado Integration Tutorial]]. [[User:Clements|Dave C.]]''40 KB (5,672 words) - 21:27, 15 August 2013
- <li>Including a tutorial for guiding the user on the application's use is a very good idea.6 KB (985 words) - 05:18, 28 January 2008
- * [[Chado Tutorial]]3 KB (469 words) - 18:08, 13 February 2014
- ...last pipeline and a protein analysis pipeline.It is hope that through this tutorial, two objectives are achieved:2 KB (272 words) - 12:53, 29 December 2010
- |tutorials=;[http://www.gramene.org/tutorials/cmap.html Tutorial @ Gramene] |doc=* [http://www.gramene.org/tutorials/cmap.html Gramene CMap User Tutorial],7 KB (996 words) - 23:40, 17 October 2013
- ...s relies heavily on the {{GBrowseAdminTutorialLink| GBrowse Administration Tutorial}}. ; [[GBrowse Tutorial 2010|GBrowse tutorial from 2010 GMOD Summer School]]11 KB (1,422 words) - 16:47, 10 April 2023
- ...d for those who may not be familiar with Chado and how it is structured. A tutorial with a few use case scenarious that describe what each line does would be i9 KB (1,641 words) - 15:48, 12 September 2011
- ...ff/tutorial.html?content-type=text%2Fhtml Using GBrowse with Bio::DB::GFF] tutorial, is the older version of the [[GFF]] feature annotation format. Its main li11 KB (1,733 words) - 14:48, 18 May 2013
- * [http://webgbrowse.cgb.indiana.edu/tutorial.html User Tutorial] - this is an extensive user guide for WebGBrowse ;[http://webgbrowse.cgb.indiana.edu/webgbrowse/tutorial.html WebGBrowse Tutorial]4 KB (540 words) - 18:31, 10 September 2013
- | tentative Chado database discussion/tutorial session2 KB (295 words) - 15:02, 13 February 2007
- ...arrive at how your MOD[[can best answer scientists questions, more than a tutorial on how to use your MOD, is of interest. We are expecting a varied audience4 KB (599 words) - 01:32, 29 March 2007
- ...tion, Pathways, Expression Connection, and more.<br /> Gene Ontology: GO Tutorial, What is GO?, GO Slim Mapper, GO Term Finder, and more.<br /> C7 KB (948 words) - 19:51, 23 January 2008
- ...tutorial on testing, see http://search.cpan.org/dist/Test-Simple/lib/Test/Tutorial.pod9 KB (1,495 words) - 20:05, 8 October 2012
- * User tutorial added Tutorial on March 15-18, 200442 KB (6,309 words) - 20:37, 30 November 2010
- /* Tutorial Headers */7 KB (704 words) - 22:25, 25 March 2014
- | Chado database discussion/tutorial session2 KB (244 words) - 01:35, 29 March 2007
- give a tutorial), and for creating virtual machines that could be used3 KB (412 words) - 17:21, 24 September 2009
- More configuration information and a short tutorial are located at:35 KB (5,565 words) - 22:39, 8 August 2012
- The images from most 2009 [[:Category:Tutorials|Tutorial]] pages include a basic ''{{GlossaryLink|GUI|graphical user interface}}'' c3 KB (543 words) - 18:43, 17 September 2012
- #REDIRECT [[Tripal Tutorial v1.1]]97 B (10 words) - 17:44, 12 July 2013
- This [[:Category:Tutorials|tutorial]] walks you through how to install and configure a [[Chado]] database, Chad ...this course you'll be working with genome annotation data from the [[MAKER Tutorial|MAKER session]]. We'll simplify this and start by considering that we have54 KB (8,190 words) - 23:34, 8 October 2012
- This [[Has topic::Chado]] tutorial was presented by [[User:Scott|Scott Cain]] as part of the [[2012 GMOD Summe50 KB (7,599 words) - 16:26, 2 September 2018
- ...ly accessible websites]. Galaxy servers make analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available t6 KB (748 words) - 19:43, 13 December 2018
- ...ter is not yet released. (''But it is now: see [[Artemis-Chado Integration Tutorial]].'')28 KB (4,093 words) - 05:54, 5 January 2011
- * a tutorial on [[Galaxy]],705 B (100 words) - 23:10, 9 October 2012
- ...tiple papers with different emphases (for example, [[Chado]] theory, Chado tutorial, and Chado community papers). Please [mailto:scott@scottcain.net contact m2 KB (282 words) - 23:08, 9 October 2012
- ...WebGBrowse comes with [http://webgbrowse.cgb.indiana.edu/tutorial.html a tutorial], [http://webgbrowse.cgb.indiana.edu/faq.html FAQ], and a [[WebGBrowse#Mail2 KB (245 words) - 23:14, 9 October 2012
- [[Category:Tutorial]]2 KB (301 words) - 19:41, 18 October 2019
- ...ere these were used to format the [[Training_and_Outreach#Online_Tutorials|Tutorial pages]].16 KB (2,420 words) - 23:18, 8 November 2013
- |tutorials=;[[GBrowse syn Tutorial]]6 KB (800 words) - 21:39, 15 October 2013
- ...f storing the same biological information. This page is not meant to be a tutorial of how YOU should model your biological information in Chado. Rather, it i17 KB (2,330 words) - 23:34, 8 October 2012
- |tutorials=;[[MAKER Tutorial]]9 KB (1,211 words) - 21:53, 2 February 2014
- See the {{GBrowseAdminTutorialLink|GBrowse Administration Tutorial}} for more details. See the {{GBrowseAdminTutorialLink|tutorial}} for more details.79 KB (12,563 words) - 16:45, 15 August 2011
- .../Generic-Genome-Browser/trunk/htdocs/tutorial/tutorial.html Administrators Tutorial].7 KB (1,138 words) - 13:06, 29 September 2010
- ...visualizing [[synteny]] in up 5 different genomes. This will be a hands-on tutorial on how to install, configure and use GBrowse_syn. == Tutorial Level ==3 KB (454 words) - 21:29, 3 October 2012
- ...emis-Chado Integration Tutorial|Artemis-Chado Integration]], and [[JBrowse Tutorial|JBrowse]]. | style="background-color: #ddffff" align="center" | '''[[Chado Tutorial|Chado]]'''<br />[[User:Scott|Scott Cain]] and [[User:Clements|Dave Clements10 KB (1,210 words) - 22:13, 16 April 2014
File:OpenHelixLogosmaller.jpg .../ OpenHelix], who wrote the [http://www.openhelix.com/gbrowse GBrowse User Tutorial].(180 × 79 (19 KB)) - 07:44, 5 February 2009- ...art Tutorial|BioMart]], [[GBrowse_syn Tutorial|GBrowse_syn]], and [[Tripal Tutorial|Tripal]] | style="background-color: #ddffff" align="center" | '''[[MAKER Tutorial|MAKER I]]'''<br />[[User:Carsonholt|Carson Holt]]<br />[[MAKER]] overview,11 KB (1,433 words) - 22:13, 16 April 2014
- #redirect [[GBrowse syn Tutorial 2013]]117 B (12 words) - 16:02, 22 July 2013
- ; [[GBrowse Tutorial 2012|GBrowse tutorial from 2013 GMOD Summer School]] : This tutorial was taught by [[User:Scott|Scott Cain]] at the [[2013 GMOD Summer School]]2 KB (236 words) - 17:10, 18 December 2013
File:NGSWithGMODWorkshop.pdf See the [[GBrowse NGS Tutorial]] for how to actually do this.(11.08 MB) - 23:10, 3 November 2009- ...gured as normal (see the {{GBrowseAdminTutorialLink|GBrowse Administration Tutorial}} and the [[GBrowse Configuration HOWTO]] for details)2 KB (386 words) - 15:52, 25 September 2009
- ...ce (PAG-XVI)], January 12-16, 2008, in San Diego. This will be a hands-on tutorial on how to install and use the [[GBrowse]] genome browser. If you are atten See the [http://www.intl-pag.org/16/16-gbrowse.html PAG tutorial page] for additional information.515 B (77 words) - 20:55, 24 January 2011
- ...ll hold a [http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools tutorial session] from September 2-5, 2008, at SRI International in Menlo Park, CA. ...e see the [http://bioinformatics.ai.sri.com/ptools/tutorial/ Pathway Tools Tutorial page] for a detailed schedule, registration information, and other details.828 B (116 words) - 21:22, 24 January 2011
- ...tutorial] well be held September 22-23, 2008 at Kings College London. This tutorial is kindly hosted by the [http://www.kcl.ac.uk/schools/pse/bioinform/ Centre The tutorial is free of charge.1 KB (194 words) - 21:26, 24 January 2011
- ...yotic Annotation Pipeline is also included, as well as a pipeline creation tutorial. For a full list of the changes, see the [http://ergatis.svn.sourceforge.n1 KB (164 words) - 21:37, 24 January 2011
- ...released by [http://www.openhelix.com OpenHelix] this week. The narrated tutorial covers: The tutorial also includes [http://www.openhelix.com/downloads/gbrowse/gbrowseslidesDL.s2 KB (268 words) - 23:07, 9 October 2012
- '''Part 1: Tutorial, August 19-21''' This introductory tutorial will educate the new user on aspects of [[Pathway Tools]] including basic u2 KB (297 words) - 23:09, 9 October 2012
- ...s an extensive [http://webgbrowse.cgb.indiana.edu/webgbrowse/tutorial.html tutorial] and [http://webgbrowse.cgb.indiana.edu/webgbrowse/faq.html FAQ], and was j2 KB (292 words) - 23:22, 3 October 2012
- ...oved along with [[GBrowse_syn|documentation]] and a [[GBrowse_syn Tutorial|tutorial]].2 KB (333 words) - 21:56, 24 January 2011
- ...[Media:TripalUsersGuideJune2009.pdf|User's Guide]] and a [[Tripal Tutorial|tutorial]] to help users install, configure and extend Tripal.1 KB (150 words) - 23:14, 9 October 2012
- ...were covered at the [[GMOD Summer School|2009 GMOD Summer Schools]]. Each tutorial includes a [[VMware]] system image to work with, and detailed instructions * '''[[Apollo Tutorial]]''' - by [[User:Elee|Ed Lee]]4 KB (542 words) - 23:11, 9 October 2012
- [[File:BA2009Logo.png|link=GBrowse NGS Tutorial|100px|right|GBrowse NGS Tutorial]] ...the [[BA2009|Bioinformatics Australia 2009 (BA2009) GMOD Workshop]]. The tutorial includes a [[VMware]] image to work with and step-by-step instructions for1 KB (156 words) - 23:10, 9 October 2012
- * Support for [[GBrowse NGS Tutorial|next generation sequencing]] data.2 KB (359 words) - 23:25, 9 October 2012
- ...on how to setup the component on that image. This year we have a [[Galaxy Tutorial]] for the first time. * '''[[Apollo Tutorial]]''' - by [[User:Elee|Ed Lee]]1 KB (223 words) - 23:09, 9 October 2012
- |tutorials=;[[JBrowse Tutorial]] covering installation and configuration ...browse.org/code/latest-release/docs/tutorial/ Getting Started with JBrowse Tutorial]8 KB (1,157 words) - 19:18, 15 April 2016
- This was be a hands-on tutorial on how to install and use the [[GBrowse]] genome browser. == Tutorial Level ==3 KB (431 words) - 19:34, 3 October 2012
- * If you are not familiar with Django, start reading the tutorial at http://docs.djangoproject.com (stable) or http://www.djangoproject.com/d ...s/ (a MUST READ if you are not familiar with the Django framework, try the tutorial)16 KB (2,412 words) - 18:11, 9 October 2012
- See the {{GBrowseAdminTutorialLink|GBrowse Tutorial}} for more details.101 KB (15,507 words) - 04:44, 9 January 2014
- ...tp://www.openhelix.com OpenHelix] later this month. This is a Flash based tutorial that goes into great detail on how to use GBrowse's basic and advanced user * Include a tutorial for first time users.50 KB (7,612 words) - 18:53, 8 October 2012
- [http://cloud.gmod.org/gbrowse2/tutorial/tutorial.html GBrowse2 Admin Tutorial]79 B (11 words) - 16:46, 18 December 2013
- ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].16 KB (2,336 words) - 19:49, 10 September 2012
- ...tutorial/tutorial.html?content-type=text%2Fhtml The GBrowse Administration Tutorial] for more information. ...-Browser/docs/tutorial/tutorial.html?pathrev=stable GBrowse Administration Tutorial].16 KB (2,387 words) - 22:13, 11 February 2014
- Giles was one of the instructors for the [[Artemis-Chado Integration Tutorial| Artemis - Chado Integration]] session at the [[2009 GMOD Summer School - E227 B (32 words) - 18:55, 11 September 2010
- ! [[GBrowse NGS Tutorial]] | Step by step tutorial on configuring [[GBrowse]] 2 to visualize NGS data using the [http://samtoo3 KB (450 words) - 00:52, 18 November 2010
- #REDIRECT [[GBrowse syn Tutorial]]34 B (4 words) - 23:38, 25 July 2012
- ; [[GBrowse NGS Tutorial]] ...(NGS) data in [[GBrowse]] is now available as a GMOD [[:Category:Tutorials|tutorial]], complete with a starting [[VMware]] image.4 KB (456 words) - 18:52, 8 October 2012
- #REDIRECT [[MAKER Tutorial 2013]]76 B (7 words) - 23:34, 29 July 2013
- #REDIRECT [[WebApollo Tutorial 2013]]84 B (7 words) - 23:35, 29 July 2013
- This [[:Category:Tutorials|tutorial]] walks you through setting up and running a [[JBrowse]] server. ...latfile-to-json.pl</tt>. We'll use some more of the data from the [[MAKER Tutorial|MAKER session]]:9 KB (1,327 words) - 22:46, 3 October 2012
- #REDIRECT [[JBrowse Tutorial 2013]]112 B (10 words) - 16:02, 22 July 2013
- If you're following this tutorial outside of the course you can copy the example files to the <tt>example1_dm ...discuss these options in more detail later on. if you are following this tutorial outside of class adjust the following values in a text editor.80 KB (12,961 words) - 23:47, 29 July 2013
- ...ies, and Linux packages change over time, and that the instructions in the tutorial will slowly drift over time. Newer versions of tutorials will be posted as403 B (62 words) - 03:59, 24 September 2009
- This [[:Category:Tutorials|tutorial]] walks you through how to use the Artemis annotation editor with a [[Chado ...this is included for completeness only and you should refer to the [[Chado Tutorial|Chado session]] for more details on this.17 KB (2,626 words) - 23:33, 8 October 2012
File:2009SumSchMAKER.pdf ...ericas]]. The contents of this presentation are replicated on the [[MAKER Tutorial]] page.(15.99 MB) - 23:12, 23 September 2009- #REDIRECT [[Galaxy Tutorial 2013]]78 B (7 words) - 23:35, 29 July 2013
- *[[Tripal Tutorial (pre version 0.3b)|Tutorial]]308 B (34 words) - 19:59, 25 July 2012
- ...but Artemis does work with [[Chado]] (see the [[Artemis-Chado Integration Tutorial]]), and the Artemis group is working closely with [[Apollo]] developers on1 KB (161 words) - 18:52, 8 October 2012
- This will be a hands-on tutorial on how to install and use the [[GBrowse]] genome browser. == Tutorial Level ==2 KB (328 words) - 18:52, 8 October 2012
- == Tutorial Level == The tutorial is aimed at biologists who have, or soon will have, genomic sequence data.3 KB (468 words) - 18:54, 8 October 2012
- == Tutorial Level == The tutorial is aimed at computer-savvy biologists and computer scientists working with2 KB (362 words) - 18:52, 8 October 2012
- #REDIRECT [[Apollo Tutorial 2011]]78 B (7 words) - 22:30, 12 February 2013
- #REDIRECT [[Chado Tutorial 2013]]76 B (7 words) - 15:52, 17 July 2013
- ...3''', available in the US East (N. Virginia) region. See the [[GMOD Cloud Tutorial]] for information on how to get this AMI.264 B (45 words) - 22:09, 11 September 2012
- ...rt''', available in the US East (N. Virginia) region. See the [[GMOD Cloud Tutorial]] for information on how to get this AMI.264 B (44 words) - 22:10, 11 September 2012
- ...rt''', available in the US East (N. Virginia) region. See the [[GMOD Cloud Tutorial]] for information on how to get this AMI.264 B (44 words) - 22:12, 11 September 2012
- ...ay''', available in the US East (N. Virginia) region. See the [[GMOD Cloud Tutorial]] for information on how to get this AMI.229 B (41 words) - 22:14, 11 September 2012
- ....3''', available in the US East (N. Virginia) region. See the [[GMOD Cloud Tutorial]] for information on how to get this AMI.264 B (45 words) - 22:15, 11 September 2012
- Back to [[Chado Tutorial]].1 KB (180 words) - 05:19, 30 September 2009
- #REDIRECT [[JBrowse Tutorial 2013]]80 B (7 words) - 23:35, 29 July 2013
- *[[Apollo Tutorial|Tutorial]]359 B (39 words) - 22:35, 23 July 2012
- *[http://www.openhelix.com/gbrowse User Tutorial] *{{GBrowseAdminTutorialLink|Admin Tutorial}}449 B (45 words) - 15:53, 25 July 2012
- *[[MAKER Tutorial|Tutorial]]329 B (36 words) - 22:38, 23 July 2012
- *[[GBrowse_syn Tutorial|Tutorial]]478 B (55 words) - 22:58, 23 July 2012
- *[[Galaxy Tutorial|Admin Tutorial]]449 B (51 words) - 22:10, 24 July 2012
- *[[BioMart Tutorial|Tutorial]]444 B (50 words) - 01:39, 25 July 2012
- *[http://www.gramene.org/tutorials/cmap.html Tutorial @ Gramene]541 B (68 words) - 22:47, 23 July 2012
- *[[Chado Tutorial|Tutorial]]324 B (31 words) - 03:58, 25 July 2012
- ...ion Documentation''' - e.g. [[GBrowse Configuration HOWTO]], [[GBrowse_syn Tutorial]], ... ...e User Tutorial], [http://www.gramene.org/tutorials/cmap_tutorial.pdf CMap Tutorial], ...26 KB (3,948 words) - 17:18, 6 October 2009
- This [[:Category:Tutorials|tutorial]] walks you through how to configure the [[GBrowse]] genome browser to disp This tutorial was taught using a [[VMware]] system image as a starting point. If you wan38 KB (5,742 words) - 18:11, 9 October 2012
