Difference between revisions of "Publications"

Revision as of 17:34, 10 July 2012

The following is a partial listing of publications/references describing GMOD components or databases and applications built using GMOD components. For a list of databases see GMOD Users.

Articles

• Choosing a genome browser for a Model Organism Database: surveying the Maize community. ^[1] PDF
• Apollo: a sequence annotation editor. ^[2] PDF‎
• The generic genome browser (GBrowse): a building block for a model organism system database. ^[3] PDF‎
• ATIDB: Arabidopsis thaliana insertion database. ^[4] PDF‎
• DroSpeGe: rapid access database for new Drosophila species genomes. ^[5] PDF‎
• ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. ^[6] PDF‎
• wFleaBase: the Daphnia genome database. ^[7] PDF‎
• BeetleBase: the model organism database for Tribolium castaneum. ^[8] PDF
• AphidBase: a database for aphid genomic resources. ^[9]
• KISS: the kinetoplastid RNA editing sequence search tool. ^[10]
• Xanthusbase: adapting wikipedia principles to a model organism database. ^[11]
• OryGenesDB: a database for rice reverse genetics. ^[12]
• SynBrowse: a synteny browser for comparative sequence analysis. ^[13] PDF‎
• FPC Web tools for rice, maize, and distribution. ^[14]
• Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana. ^[15]
• The Legume Information System (LIS): an integrated information resource for comparative legume biology. ^[16]
• Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. ^[17] (See YSB.)
• The development of BAC-end sequence-based microsatellite markers and placement in the physical and genetic maps of soybean. ^[18]
• T1DBase: integration and presentation of complex data for type 1 diabetes research. ^[19]
• Gbrowse Moby: a Web-based browser for BioMoby Services. ^[20]
• Expanded protein information at SGD: new pages and proteome browser. ^[21]
• SwissRegulon: a database of genome-wide annotations of regulatory sites. ^[22]
• SynView: a GBrowse-compatible approach to visualizing comparative genome data. ^[23]
• Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. ^[24]
• Development of an integrated genome informatics, data management and workflow infrastructure: a toolbox for the study of complex disease genetics. ^[25]
• A Chado case study: an ontology-based modular schema for representing genome-associated biological information. ^[26]
• Celsius: a community resource for Affymetrix microarray data ^[27] PDF
• Caryoscope: an Open Source Java application for viewing microarray data in a genomic context. ^[28]
• PopGenIE: The Populus Genome Integrative Explorer. ^[29]

Bibliography

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