PAG 2015
From GMOD
There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2015. There is a dedicated GMOD Workshop and also posters and presentations from many GMOD users, as well as from developers of GMOD tools.
Contents
Core GMOD Content
There are a number of items focussed on the tools and services that GMOD provides. These are:
Date | Time | Session | Component(s) | Presenter / Organizer | Location |
---|---|---|---|---|---|
Jan. 11 (Sun) | 1:30 - 3:10 | W367: JBrowse Installation and Configuration (Tutorial page) | JBrowse | Scott Cain | California Room |
Jan. 11 (Sun) | 4:30 - 6:10 | Tripal Database Network and Initiatives | Tripal | Stephen Ficklin and Dorrie Main | California Room |
Jan 13. (Tue) | 4:30 - 6:10 | W354: Galaxy for SNP and Variant Data Analysis | Galaxy | Dave Clements | California Room |
Jan. 14 (Wed) | 10:30 - 2:30 | GMOD Workshop | GMOD | Scott Cain | California Room |
Tripal Database Network and Initiatives Workshop
The Tripal Database Network and Initiatives Workshop will be held, Sunday, January 11, in the California Room.
4:00-4:30 | W872: Tripal Overview & Future Developments | Stephen Ficklin |
4:30 - 5:00 | W873: Extending Tripal for Specialized Display and Management of Diversity and Breeding Data | Lacey-Anne Sanderson |
5:00 - 5:15 | W874: GDR/CottonGen: Converting Legacy Sites to Tripal | Sook Jung |
5:15 - 5:30 | W875: The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal | Christopher Childers |
5:30 - 5:45 | W876: Tripal within the Arabidopsis Information Portal (AIP) | Vivek Krishnakumar |
5:45 - 6:00 | W977: Tripal within the Legumes Genomics Community | Ethalinda Cannon |
6:00 - 6:10 | W878: The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development | Margaret Staton |
GMOD Workshop
The GMOD workshop on Wednesday January 14th will be held in the Golden West room. The schedule is:
10:30 - 10:50 | W407 - The Future of GMOD and Chado | Scott Cain |
10:50 - 11:10 | W408 - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes | Lacey-Anne Sanderson |
11:10 - 11:30 | W409 - Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study | Richard Hayes |
11:30 - 11:50 | W410 - JBrowse within the Arabidopsis Information Portal (AIP) Project | Vivek Krishnakumar |
11:50 - 12:10 | W411 - Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes | Monica Munoz-Torres |
12:10 - 12:30 | W412 - The Teosinte (Zea mays ssp. parviglumis) de novo Genome Assembly | Arun S. Seetharam |
12:30 - 1:30 | Lunch Break | |
1:30 | Panel Discussion | TBD |
GMOD Consumers and Providers
There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:
Time | Title | Presenter | Location | ||||
---|---|---|---|---|---|---|---|
Saturday January 10 | |||||||
9:35 - 9:55 | W068: Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center | Kim Worley | Esquire | ||||
10:30 - 11:00 | W238: Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines) | Dave Micklos | California Room | ||||
2:10 - 2:30 | W162: Citrus Genome DB Updates | Sook Jung | Pacific Salon 6-7 | ||||
Sunday January 11 | |||||||
9:00 - 9:20 | W695: Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation | Brent Buckner | Towne | ||||
1:30 - 1:50 | W311: TreeGenes: A Comprehensive Resource for Forest Tree Genomics | Emily Grau | Sunrise | ||||
2:30- 2:50 | W421: Overview of the GnpIS Grape Genomics and Genetic Integrative Resource for Diversity Studies | Nacer Mohellibi | Pacific Salon 6-7 | ||||
2:45 - 3:00 | C14: CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research | Jing Yu | California Room | ||||
Monday January 12 | |||||||
EVEN | |||||||
10:00 - 11:30 | P346: PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information | Ethalinda Cannon | Poster session | ||||
10:00 - 11:30 | P790: Data Integration for the Plant Research Community: The Arabidopsis Information Portal | Chia-Yi Cheng | Poster session | ||||
10:00 - 11:30 | P792: Developing Content for the Arabidopsis Information Portal | Matt Vaughn | Poster session | ||||
10:00 - 11:30 | P1010: The i5k Workspace@NAL - Enabling Genomic Data Access, Visualization, and Curation of Arthropod Genomes | Monica Poelchau | Poster session | ||||
10:00 - 11:30 | P654: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B | Thomas Letellier | Poster session | ||||
10:00 - 11:30 | [ P]: | Poster session | |||||
10:00 - 11:30 | [ P]: | Poster session | |||||
2:30-2:45 | C13: How to Use GDR, the Genome Database for Rosaceae | Sook Joon | California Room | ||||
ODD | |||||||
3:00 - 4:30 | P101: High-Throughput SNP Genotyping for Crop Improvement | Michael J. Thomson | Poster session | ||||
3:00 - 4:30 | P301: Tools for Phylogenomic Exploration within and Among Clade-Oriented Databases | Alan Cleary | Poster session | ||||
3:00 - 4:30 | P953: CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research | Jing Yu | - | 3:00 - 4:30 | P1029: The Construction of Genome Annotation Database for Liverwort | Hideki Nagasaki | Poster session
session |
3:00 - 4:30 | [ P]: | Poster session | |||||
3:00 - 4:30 | [ P]: | Poster session | |||||
3:00 - 4:30 | [ P]: | Poster session | |||||
3:00 - 4:30 | [ P]: | Poster session | |||||
Tuesday January 13 | |||||||
11:00 - 11:15 | C17: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B | Thomas Letellier | California Room | ||||
11:30 - 11:45 | C19: TreeGenes and CartograTree: Tools for Forest Tree Genomics | Emily Grau | California Room | ||||
12:30 - 12:45 | C23: Using the Arabidopsis Information Portal | Jason Miller | California Room | ||||
4:00 - 6:10 | W354: Galaxy for SNP and Variant Data Analysis | Dave Clements | California Room | ||||
Wednesday January 14 | |||||||
10:30 - 2:30 | GMOD Workshop | Golden West |