PAG 2015

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Plant and Animal Genomes 2015 (PAG XXIII

There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2015. There is a dedicated GMOD Workshop and also posters and presentations from many GMOD users, as well as from developers of GMOD tools.

Core GMOD Content

There are a number of items focussed on the tools and services that GMOD provides. These are:

Date Time Session Component(s) Presenter / Organizer Location
Jan. 11 (Sun) 1:30 - 3:10 W367: JBrowse Installation and Configuration JBrowse Scott Cain California Room
Jan. 11 (Sun) 4:30 - 6:10 Tripal Database Network and Initiatives Tripal Stephen Ficklin and Dorrie Main California Room
Jan 13. (Tue) 4:30 - 6:10 W354: Galaxy for SNP and Variant Data Analysis Galaxy Dave Clements California Room
Jan. 14 (Wed) 10:30 - 2:30 GMOD Workshop GMOD Scott Cain California Room

Tripal Database Network and Initiatives Workshop

The Tripal Database Network and Initiatives Workshop will be held, Sunday, January 11, in the California Room.

4:00-4:30 W872: Tripal Overview & Future Developments Stephen Ficklin
4:30 - 5:00 W873: Extending Tripal for Specialized Display and Management of Diversity and Breeding Data Lacey-Anne Sanderson
5:00 - 5:15 W874: GDR/CottonGen: Converting Legacy Sites to Tripal Sook Jung
5:15 - 5:30 W875: The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal Christopher Childers
5:30 - 5:45 W876: Tripal within the Arabidopsis Information Portal (AIP) Vivek Krishnakumar
5:45 - 6:00 W977: Tripal within the Legumes Genomics Community Ethalinda Cannon
6:00 - 6:10 W878: The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development Margaret Staton


GMOD Workshop

The GMOD workshop on Wednesday January 14th will be held in the Golden West room. The schedule is:

10:30 - 10:50 W407 - The Future of GMOD and Chado Scott Cain
10:50 - 11:10 W408 - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes Lacey-Anne Sanderson
11:10 - 11:30 W409 - Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study Richard Hayes
11:30 - 11:50 W410 - JBrowse within the Arabidopsis Information Portal (AIP) Project Vivek Krishnakumar
11:50 - 12:10 W411 - Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes Monica Munoz-Torres
12:10 - 12:30 W412 - The Teosinte (Zea mays ssp. parviglumis) de novo Genome Assembly Arun S. Seetharam
12:30 - 1:30 Lunch Break
1:30 Panel Discussion TBD

GMOD Consumers and Providers

There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:

Time Title Presenter Location
Saturday January 10
9:35 - 9:55 W068: Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center Kim Worley Esquire
10:30 - 11:00 W238: Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines) Dave Micklos California Room
Sunday January 11
9:00 - 9:20 W695: Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation Brent Buckner Towne
1:30 - 1:50 W311: TreeGenes: A Comprehensive Resource for Forest Tree Genomics Emily Grau Sunrise
2:30- 2:50 W421: Overview of the GnpIS Grape Genomics and Genetic Integrative Resource for Diversity Studies Nacer Mohellibi Pacific Salon 6-7
Monday January 12
EVEN
10:00 - 11:30 P346: PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information Ethalinda Cannon Poster session
10:00 - 11:30 P400: Data Integration for the Plant Research Community: The Arabidopsis Information Portal Chia-Yi Cheng Poster session
10:00 - 11:30 P402: Developing Content for the Arabidopsis Information Portal Matt Vaughn Poster session
10:00 - 11:30 P1010: The i5k Workspace@NAL - Enabling Genomic Data Access, Visualization, and Curation of Arthropod Genomes Monica Poelchau Poster session
10:00 - 11:30 [ P]: Poster session
10:00 - 11:30 [ P]: Poster session
10:00 - 11:30 [ P]: Poster session
ODD
3:00 - 4:30 P101: High-Throughput SNP Genotyping for Crop Improvement Michael J. Thomson Poster session
3:00 - 4:30 P301: Tools for Phylogenomic Exploration within and Among Clade-Oriented Databases Alan Cleary Poster session
3:00 - 4:30 P1029: The Construction of Genome Annotation Database for Liverwort Hideki Nagasaki Poster session
3:00 - 4:30 [ P]: Poster session
3:00 - 4:30 [ P]: Poster session
3:00 - 4:30 [ P]: Poster session
3:00 - 4:30 [ P]: Poster session
3:00 - 4:30 [ P]: Poster session
Tuesday January 13
11:30 - 11:45 C19: TreeGenes and CartograTree: Tools for Forest Tree Genomics Emily Grau California Room
4:00 pm - 6:10 [Galaxy for NGS Data Analysis: A Hands-on Workshop Dave Clements California Room
Wednesday January 14
10:30 - 2:30 GMOD Workshop Golden West