Difference between revisions of "PAG 2015"

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(Created page with "Plant and Animal Genomes 2015 (PAG XXIII There is plenty of GMOD content at the [http://www.intlpag.org/2...")
 
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[[File:PAGLogo300.png|right|200px|link=http://www.intlpag.org/2015/|Plant and Animal Genomes 2015 (PAG XXIII]]
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[[File:PAGLogo300.png|right|150px|link=http://www.intlpag.org/2015/|Plant and Animal Genomes 2015 (PAG XXIII]]
 
There is plenty of GMOD content at the [http://www.intlpag.org/2015/ Plant and Animal Genomes (PAG)] conference in January 2015. There is a dedicated GMOD Workshop and  also posters and presentations from many GMOD users, as well as from developers of GMOD tools.   
 
There is plenty of GMOD content at the [http://www.intlpag.org/2015/ Plant and Animal Genomes (PAG)] conference in January 2015. There is a dedicated GMOD Workshop and  also posters and presentations from many GMOD users, as well as from developers of GMOD tools.   
  
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{| class="wikitable"
 
{| class="wikitable"
 
|-
 
|-
! Date !! Time !! Session !! Topic !! Presenter !! Location
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! Date !! Time !! Session !! Component(s) !! Presenter / Organizer !! Location
 
|-
 
|-
| rowspan=7 | Jan. 11 (Sun)  
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| Jan. 11 (Sun) || 4:30-6:10 || [[#Tripal Database Network and Initiatives Workshop|Tripal Database Network and Initiatives]] || [[Tripal]] || Stephen Ficklin and Dorrie Main || California Room
| 4:00-4:30
+
| rowspan=7" | [https://pag.confex.com/pag/xxiii/webprogram/Session2851.html Tripal Database Network and Initiatives]
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| [https://pag.confex.com/pag/xxiii/webprogram/Paper14953.html W872]: [[Tripal]] Overview & Future Developments
+
| Stephen Ficklin
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| rowspan=7 | [[Tripal]]  
+
| rowspan=7 | California Room
+
 
|-
 
|-
| 4:30 - 5:00 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14948.html W873]: Extending [[Tripal]] for Specialized Display and Management of Diversity and Breeding Data || Lacey-Anne Sanderson ||
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| Jan. 10 (Sat.) || 4:00 - 6:10 || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=11AC Next Generation Genome Annotation and Analysis] || Towne || [[MAKER]]
 +
|}
 +
 
 +
== Tripal Database Network and Initiatives Workshop ==
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 +
The [https://pag.confex.com/pag/xxiii/webprogram/Session2851.html Tripal Database Network and Initiatives Workshop] will be held, Sunday, January 11, in the California Room.
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 +
{| class="wikitable"
 +
|-
 +
| 4:00-4:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14953.html W872]: [[Tripal]] Overview & Future Developments || Stephen Ficklin
 +
|-
 +
| 4:30 - 5:00 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14948.html W873]: Extending [[Tripal]] for Specialized Display and Management of Diversity and Breeding Data || Lacey-Anne Sanderson  
 
|-
 
|-
 
| 5:00 - 5:15 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14947.html W874]: GDR/CottonGen: Converting Legacy Sites to [[Tripal]] || Sook Jung  
 
| 5:00 - 5:15 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14947.html W874]: GDR/CottonGen: Converting Legacy Sites to [[Tripal]] || Sook Jung  
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|-
 
|-
 
| 6:00 - 6:10 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14949.html W878]: The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development || Margaret Staton  
 
| 6:00 - 6:10 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14949.html W878]: The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development || Margaret Staton  
|-
 
| Jan. 10 (Sat.) || 4:00 - 6:10 || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=11AC Next Generation Genome Annotation and Analysis] || Towne || [[MAKER]]
 
 
|}
 
|}
  
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{| class="wikitable"
 
{| class="wikitable"
 
|-
 
|-
| 10:30 - 10-50 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17188.html  W407] - The Future of GMOD and Chado || [[User:Scott|Scott Cain]]
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| 10:30 - 10:50 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17188.html  W407] - The Future of GMOD and Chado || [[User:Scott|Scott Cain]]
 
|-
 
|-
 
| 10:50 - 11:10 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17190.html W408] - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes  || Lacey-Anne Sanderson
 
| 10:50 - 11:10 || [https://pag.confex.com/pag/xxiii/webprogram/Paper17190.html W408] - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes  || Lacey-Anne Sanderson
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| 12:30 - 1:30 ||colspan="2" | Lunch Break
 
| 12:30 - 1:30 ||colspan="2" | Lunch Break
 
|-
 
|-
| 1:30 PM || Panel Discussion  || TBD
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| 1:30  || Panel Discussion  || TBD
 
|}
 
|}
  

Revision as of 19:23, 16 December 2014

Plant and Animal Genomes 2015 (PAG XXIII

There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2015. There is a dedicated GMOD Workshop and also posters and presentations from many GMOD users, as well as from developers of GMOD tools.

Core GMOD Content

There are a number of items focussed on the tools and services that GMOD provides. These are:

Date Time Session Component(s) Presenter / Organizer Location
Jan. 11 (Sun) 4:30-6:10 Tripal Database Network and Initiatives Tripal Stephen Ficklin and Dorrie Main California Room
Jan. 10 (Sat.) 4:00 - 6:10 Next Generation Genome Annotation and Analysis Towne MAKER

Tripal Database Network and Initiatives Workshop

The Tripal Database Network and Initiatives Workshop will be held, Sunday, January 11, in the California Room.

4:00-4:30 W872: Tripal Overview & Future Developments Stephen Ficklin
4:30 - 5:00 W873: Extending Tripal for Specialized Display and Management of Diversity and Breeding Data Lacey-Anne Sanderson
5:00 - 5:15 W874: GDR/CottonGen: Converting Legacy Sites to Tripal Sook Jung
5:15 - 5:30 W875: The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal Christopher Childers
5:30 - 5:45 W876: Tripal within the Arabidopsis Information Portal (AIP) Vivek Krishnakumar
5:45 - 6:00 W977: Tripal within the Legumes Genomics Community Ethalinda Cannon
6:00 - 6:10 W878: The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development Margaret Staton


GMOD Workshop

The GMOD workshop on Wednesday January 14th will be held in the Golden West room. The schedule is:

10:30 - 10:50 W407 - The Future of GMOD and Chado Scott Cain
10:50 - 11:10 W408 - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes Lacey-Anne Sanderson
11:10 - 11:30 W409 - Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study Richard Hayes
11:30 - 11:50 W410 - JBrowse within the Arabidopsis Information Portal (AIP) Project Vivek Krishnakumar
11:50 - 12:10 W411 - Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes Monica Munoz-Torres
12:10 - 12:30 W412 - The Teosinte (Zea mays ssp. parviglumis) de novo Genome Assembly Arun S. Seetharam
12:30 - 1:30 Lunch Break
1:30 Panel Discussion TBD

GMOD Consumers and Providers

There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:

EVEN ODD
Date Event Details Presenter Location
Saturday January 10
Sunday January 11
1:30 - 1:50 W311 - TreeGenes: A Comprehensive Resource for Forest Tree Genomics Emily Grau Sunrise
2:30- 2:50 W421 - Overview of the GnpIS Grape Genomics and Genetic Integrative Resource for Diversity Studies Nacer Mohellibi Pacific Salon 6-7
Monday January 12
10:00 - 11:30 P400: Data Integration for the Plant Research Community: The Arabidopsis Information Portal Chia-Yi Cheng Poster session
10:00 - 11:30 P402: Developing Content for the Arabidopsis Information Portal Matt Vaughn Poster session
10:00 - 11:30 [ P]: Poster session
10:00 - 11:30 [ P]: Poster session
10:00 - 11:30 [ P]: Poster session
10:00 - 11:30 [ P]: Poster session
10:00 - 11:30 [ P]: Poster session
3:00 - 4:30 #P: [ ] Poster session
3:00 - 4:30 #P: [ ] Poster session
3:00 - 4:30 #P: [ ] Poster session
3:00 - 4:30 #P: [ ] Poster session
3:00 - 4:30 #P: [ ] Poster session
3:00 - 4:30 #P: [ ] Poster session
3:00 - 4:30 #P: [ ] Poster session
3:00 - 4:30 #P: [ ] Poster session
Tuesday January 13
11:30 - 11:45 C19: TreeGenes and CartograTree: Tools for Forest Tree Genomics Emily Grau California Room
4:00 pm - 6:10 [Galaxy for NGS Data Analysis: A Hands-on Workshop Dave Clements California Room
Wednesday January 14
10:30 - 2:30 GMOD Workshop]] Golden West