Difference between revisions of "PAG 2015"
From GMOD
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+ | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16367.html P268]: New Data Mining Interfaces at the Bovine Genome Database || Colin Diesh || Poster session | ||
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|10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15302.html P346]: PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information || Ethalinda Cannon || Poster session | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15302.html P346]: PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information || Ethalinda Cannon || Poster session | ||
+ | - | ||
+ | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper14696.html P654]: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B || Thomas Letellier || Poster session | ||
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|10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16112.html P790]: Data Integration for the Plant Research Community: The Arabidopsis Information Portal || Chia-Yi Cheng || Poster session | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16112.html P790]: Data Integration for the Plant Research Community: The Arabidopsis Information Portal || Chia-Yi Cheng || Poster session | ||
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|10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16142.html P792]: Developing Content for the Arabidopsis Information Portal || Matt Vaughn || Poster session | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16142.html P792]: Developing Content for the Arabidopsis Information Portal || Matt Vaughn || Poster session | ||
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+ | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15461.html P852]: TOMATOMICS: An Integrated Database for Omics Information in Tomato || Soichi Ozaki || Poster session | ||
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|10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16655.html P1010]: The i5k Workspace@NAL - Enabling Genomic Data Access, Visualization, and Curation of Arthropod Genomes || Monica Poelchau || Poster session | |10:00 - 11:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16655.html P1010]: The i5k Workspace@NAL - Enabling Genomic Data Access, Visualization, and Curation of Arthropod Genomes || Monica Poelchau || Poster session | ||
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− | |10:00 - 11:30 || [ | + | |10:00 - 11:30 || [ P]: || || Poster session |
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|10:00 - 11:30 || [ P]: || || Poster session | |10:00 - 11:30 || [ P]: || || Poster session | ||
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| 3:00 - 4:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16477.html P301]: Tools for Phylogenomic Exploration within and Among Clade-Oriented Databases || Alan Cleary || Poster session | | 3:00 - 4:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16477.html P301]: Tools for Phylogenomic Exploration within and Among Clade-Oriented Databases || Alan Cleary || Poster session | ||
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− | | 3:00 - 4:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15773.html P953]: CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research || Jing Yu || Poster |- | + | | 3:00 - 4:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15773.html P953]: CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research || Jing Yu || Poster session |
+ | |- | ||
| 3:00 - 4:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15982.html P1029]: The Construction of Genome Annotation Database for Liverwort || Hideki Nagasaki || Poster session | | 3:00 - 4:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper15982.html P1029]: The Construction of Genome Annotation Database for Liverwort || Hideki Nagasaki || Poster session | ||
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− | | 3:00 - 4:30 || [ | + | | 3:00 - 4:30 || [https://pag.confex.com/pag/xxiii/webprogram/Paper16382.html P1117]: An Integrated Annotation Data Warehouse at the Hymenoptera Genome Database || Aditi Tayal || Poster session |
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| 3:00 - 4:30 || [ P]: || || Poster session | | 3:00 - 4:30 || [ P]: || || Poster session | ||
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| colspan=3 | '''Wednesday January 14''' | | colspan=3 | '''Wednesday January 14''' | ||
|- | |- | ||
− | | 10:30 - 2:30|| [[#GMOD Workshop|GMOD Workshop]] || Golden West | + | | 10:30 - 2:30|| [[#GMOD Workshop|GMOD Workshop]] || [[Scott|Scott Cain]] and the GMOD Community || Golden West |
|} | |} | ||
[[Category:Conferences]] | [[Category:Conferences]] |
Revision as of 22:51, 18 December 2014
There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2015. There is a dedicated GMOD Workshop and also posters and presentations from many GMOD users, as well as from developers of GMOD tools.
Contents
Core GMOD Content
There are a number of items focussed on the tools and services that GMOD provides. These are:
Date | Time | Session | Component(s) | Presenter / Organizer | Location |
---|---|---|---|---|---|
Jan. 11 (Sun) | 1:30 - 3:10 | W367: JBrowse Installation and Configuration (Tutorial page) | JBrowse | Scott Cain | California Room |
Jan. 11 (Sun) | 4:30 - 6:10 | Tripal Database Network and Initiatives | Tripal | Stephen Ficklin and Dorrie Main | California Room |
Jan 13. (Tue) | 4:30 - 6:10 | W354: Galaxy for SNP and Variant Data Analysis | Galaxy | Dave Clements | California Room |
Jan. 14 (Wed) | 10:30 - 2:30 | GMOD Workshop | GMOD | Scott Cain | California Room |
Tripal Database Network and Initiatives Workshop
The Tripal Database Network and Initiatives Workshop will be held, Sunday, January 11, in the California Room.
4:00-4:30 | W872: Tripal Overview & Future Developments | Stephen Ficklin |
4:30 - 5:00 | W873: Extending Tripal for Specialized Display and Management of Diversity and Breeding Data | Lacey-Anne Sanderson |
5:00 - 5:15 | W874: GDR/CottonGen: Converting Legacy Sites to Tripal | Sook Jung |
5:15 - 5:30 | W875: The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal | Christopher Childers |
5:30 - 5:45 | W876: Tripal within the Arabidopsis Information Portal (AIP) | Vivek Krishnakumar |
5:45 - 6:00 | W977: Tripal within the Legumes Genomics Community | Ethalinda Cannon |
6:00 - 6:10 | W878: The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development | Margaret Staton |
GMOD Workshop
The GMOD workshop on Wednesday January 14th will be held in the Golden West room. The schedule is:
10:30 - 10:50 | W407 - The Future of GMOD and Chado | Scott Cain |
10:50 - 11:10 | W408 - KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes | Lacey-Anne Sanderson |
11:10 - 11:30 | W409 - Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study | Richard Hayes |
11:30 - 11:50 | W410 - JBrowse within the Arabidopsis Information Portal (AIP) Project | Vivek Krishnakumar |
11:50 - 12:10 | W411 - Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes | Monica Munoz-Torres |
12:10 - 12:30 | W412 - The Teosinte (Zea mays ssp. parviglumis) de novo Genome Assembly | Arun S. Seetharam |
12:30 - 1:30 | Lunch Break | |
1:30 | Panel Discussion | TBD |
GMOD Consumers and Providers
There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:
Time | Title | Presenter | Location | |||||
---|---|---|---|---|---|---|---|---|
Saturday January 10 | ||||||||
9:35 - 9:55 | W068: Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center | Kim Worley | Esquire | |||||
10:30 - 11:00 | W238: Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines) | Dave Micklos | California Room | |||||
2:10 - 2:30 | W162: Citrus Genome DB Updates | Sook Jung | Pacific Salon 6-7 | |||||
Sunday January 11 | ||||||||
9:00 - 9:20 | W695: Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation | Brent Buckner | Towne | |||||
1:30 - 1:50 | W311: TreeGenes: A Comprehensive Resource for Forest Tree Genomics | Emily Grau | Sunrise | |||||
2:30- 2:50 | W421: Overview of the GnpIS Grape Genomics and Genetic Integrative Resource for Diversity Studies | Nacer Mohellibi | Pacific Salon 6-7 | |||||
2:45 - 3:00 | C14: CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research | Jing Yu | California Room | |||||
Monday January 12 | ||||||||
EVEN | ||||||||
10:00 - 11:30 | P268: New Data Mining Interfaces at the Bovine Genome Database | Colin Diesh | Poster session | |||||
10:00 - 11:30 | P346: PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information | Ethalinda Cannon | Poster session
- |
10:00 - 11:30 | P654: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B | Thomas Letellier | Poster session | |
10:00 - 11:30 | P790: Data Integration for the Plant Research Community: The Arabidopsis Information Portal | Chia-Yi Cheng | Poster session | |||||
10:00 - 11:30 | P792: Developing Content for the Arabidopsis Information Portal | Matt Vaughn | Poster session | - | 10:00 - 11:30 | P852: TOMATOMICS: An Integrated Database for Omics Information in Tomato | Soichi Ozaki | Poster session |
10:00 - 11:30 | P1010: The i5k Workspace@NAL - Enabling Genomic Data Access, Visualization, and Curation of Arthropod Genomes | Monica Poelchau | Poster session | |||||
10:00 - 11:30 | [ P]: | Poster session | ||||||
10:00 - 11:30 | [ P]: | Poster session | ||||||
10:00 - 11:30 | [ P]: | Poster session | ||||||
2:30-2:45 | C13: How to Use GDR, the Genome Database for Rosaceae | Sook Joon | California Room | |||||
ODD | ||||||||
3:00 - 4:30 | P101: High-Throughput SNP Genotyping for Crop Improvement | Michael J. Thomson | Poster session | |||||
3:00 - 4:30 | P301: Tools for Phylogenomic Exploration within and Among Clade-Oriented Databases | Alan Cleary | Poster session | |||||
3:00 - 4:30 | P953: CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research | Jing Yu | Poster session | |||||
3:00 - 4:30 | P1029: The Construction of Genome Annotation Database for Liverwort | Hideki Nagasaki | Poster session | |||||
3:00 - 4:30 | P1117: An Integrated Annotation Data Warehouse at the Hymenoptera Genome Database | Aditi Tayal | Poster session | |||||
3:00 - 4:30 | [ P]: | Poster session | ||||||
3:00 - 4:30 | [ P]: | Poster session | ||||||
3:00 - 4:30 | [ P]: | Poster session | ||||||
Tuesday January 13 | ||||||||
11:00 - 11:15 | C17: Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B | Thomas Letellier | California Room | |||||
11:30 - 11:45 | C19: TreeGenes and CartograTree: Tools for Forest Tree Genomics | Emily Grau | California Room | |||||
12:30 - 12:45 | C23: Using the Arabidopsis Information Portal | Jason Miller | California Room | |||||
4:00 - 6:10 | W354: Galaxy for SNP and Variant Data Analysis | Dave Clements | California Room | |||||
Wednesday January 14 | ||||||||
10:30 - 2:30 | GMOD Workshop | Scott Cain and the GMOD Community | Golden West |