PAG 2014

From GMOD
Revision as of 03:37, 8 January 2014 by Girlwithglasses (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Plant and Animal Genomes conference, aka PAG XXII

There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2014. In addition to the day-long workshop on GMOD tools, there are also posters and presentations from many GMOD users, as well as from developers of GMOD tools.

Core GMOD Content

There are a number of items focussed on the tools and services that GMOD provides. These are:

Date Time Session Type Location
11 Jan. (Sat.) 1:30 pm - 3:40 pm Generic Genome Browser Workshop California
13 Jan. (Mon.) 10:00 am - 11:30 am GMOD in the Cloud and GMOD in a Box Poster Grand Exhibit Hall
15 Jan. (Wed.) 10:30 am - 5:00 pm GMOD Workshop Golden West


All Day GMOD Workshop

The GMOD workshop on Wednesday January 15th will be held in the Golden West room. The schedule will be as follows:

10:30 AM - 11:10 AM W395 - GMOD in the Cloud Scott Cain, GMOD Coordinator
11:10 AM - 11:50 AM W396 - URGI Plant and Fungi Platform: Distributed Resources through GMOD Tools URGI team
11:50 AM - 12:30 PM W397 - Galaxy CloudMan: A Gentle Introduction to Data Analysis on the Cloud Dave Clements Galaxy Project
12:30 PM - 1:10 PM W398 - JBrowse: A Next-Generation Genome Browser Robert Buels, JBrowse developer
13:10 PM - 2:50 PM W399 - MAKER Carson Holt, MAKER developer
3:05 PM - 3:45 PM W400 - WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation Robert Buels, JBrowse developer, Ed Lee WebApollo developer
3:45 PM - 4:25 PM W401 - Tripal Lacey-Anne Sanderson, Stephen P. Ficklin, Tripal developers

GMOD Consumers and Providers

There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection:

Date Event Details Location
Saturday 11th January
10:30 am - 12:40 pm DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom California
10:30 am - 12:40 pm Managing Crop Phenotype Data Pacific Salon 2
1:30 pm - 3:40 pm Computer Demos 1 California
4:00 pm - 6:10 pm Next Generation Genome Annotation and Analysis Towne
Sunday 12th January
10:30 am - 12:40 pm Solanaceae Pacific Salon 1
1:30 pm - 3:40 pm Generic Genome Browser California
4:00 pm - 6:10 pm Coffee Genomics Pacific Salon 4-5 (2nd Floor)
Monday 13th January
7:00 am - 10:00 pm Bioenergy Grand Exhibit Hall
10:00 am - 11:30 am ATGC Transcriptomics: An Application to Explore and Analyze de novo Transcriptomic Data
10:00 am - 11:30 am Bioinformatic Solutions in Forest Genomics: Accessing the Treegenes Database
10:00 am - 11:30 am Bovine Genome Database: Resources for Re-Annotating the Bos taurus Genome
10:00 am - 11:30 am Defining haplotypes in genic and non-genic regions using user specified window size
10:00 am - 11:30 am Genome-Wide DNA Methylation Profile of the Muscle (longissimus dorsi) Tissue in Swine
10:00 am - 11:30 am GMOD in the Cloud and GMOD in a Box
10:00 am - 11:30 am Identification of Candidate Genes at Rvi19 and Rvi20, Two Apple Scab Resistance Loci in the ‘Honeycrisp’ Apple (Malus x domestica)
10:00 am - 11:30 am Integrative System for Gene Family Gathering and Analysis in a Context of Crops’ Stress Response Study
10:00 am - 11:30 am Intermine Webservices for Phytozome
10:00 am - 11:30 am The South Green Bioinformatics Platform
12:50 pm - 3:00 pm Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium Pacific Salon 6-7 (2nd Floor)
12:50 pm - 3:00 pm Computer Demos 2 California
12:50 pm - 3:00 pm Generation Challenge Program Royal Palm Salon 4,5,6
3:00 pm - 4:30 pm Accessing SGN Genomes through Tools
3:00 pm - 4:30 pm Annotation of the Salix purpurea L. Genome and Gene Families Important for Biomass Production
3:00 pm - 4:30 pm Assembly and Annotation of the Etheostoma tallapoosae Genome
3:00 pm - 4:30 pm Crop Ontology, a Resource for Enabling Access to Breeders' Data
3:00 pm - 4:30 pm Crop>pedia
3:00 pm - 4:30 pm Hymenoptera Genome Database: 2014 Update
3:00 pm - 4:30 pm Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated By the Research Communities
3:00 pm - 4:30 pm Re-Annotation of the Strawberry (Fragaria vesca) Genome
3:00 pm - 4:30 pm The Legume Information System 2014
Tuesday 14th January
10:30 am - 12:40 pm Banana Genomics Pacific Salon 6-7 (2nd Floor)
10:30 am - 12:40 pm SGN Workshop - Solanaceae Genomes, Tools, and the Breeder’s Toolbox Towne
4:00 pm - 6:10 pm Galaxy for NGS Data Analysis: A Hands-on Workshop California
Wednesday 15th January
10:30 am - 5:00 pm GMOD Golden West