Difference between revisions of "PAG 2014"
From GMOD
m (→All Day GMOD Workshop) |
m (→GMOD Consumers and Providers) |
||
Line 76: | Line 76: | ||
|7:00 am - 10:00 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1BA8CC Bioenergy] || ||Grand Exhibit Hall | |7:00 am - 10:00 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1BA8CC Bioenergy] || ||Grand Exhibit Hall | ||
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACEC2 ATGC Transcriptomics: An Application to Explore and Analyze de novo Transcriptomic Data] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACEC2 ATGC Transcriptomics: An Application to Explore and Analyze de novo Transcriptomic Data] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AACC7 Bioinformatic Solutions in Forest Genomics: Accessing the Treegenes Database] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AACC7 Bioinformatic Solutions in Forest Genomics: Accessing the Treegenes Database] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAFCA Bovine Genome Database: Resources for Re-Annotating the Bos taurus Genome] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAFCA Bovine Genome Database: Resources for Re-Annotating the Bos taurus Genome] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AA0CE Defining haplotypes in genic and non-genic regions using user specified window size] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AA0CE Defining haplotypes in genic and non-genic regions using user specified window size] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=10ABCB Genome-Wide DNA Methylation Profile of the Muscle (longissimus dorsi) Tissue in Swine] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=10ABCB Genome-Wide DNA Methylation Profile of the Muscle (longissimus dorsi) Tissue in Swine] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAECB GMOD in the Cloud and GMOD in a Box] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAECB GMOD in the Cloud and GMOD in a Box] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1EACC7 Identification of Candidate Genes at Rvi19 and Rvi20, Two Apple Scab Resistance Loci in the ‘Honeycrisp’ Apple (Malus x domestica)] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1EACC7 Identification of Candidate Genes at Rvi19 and Rvi20, Two Apple Scab Resistance Loci in the ‘Honeycrisp’ Apple (Malus x domestica)] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1DA9CA Integrative System for Gene Family Gathering and Analysis in a Context of Crops’ Stress Response Study] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1DA9CA Integrative System for Gene Family Gathering and Analysis in a Context of Crops’ Stress Response Study] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACDC0 Intermine Webservices for Phytozome] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACDC0 Intermine Webservices for Phytozome] || Poster || |
|- | |- | ||
− | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACECC The South Green Bioinformatics Platform] || | + | |10:00 am - 11:30 am || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACECC The South Green Bioinformatics Platform] || Poster || |
|- | |- | ||
|12:50 pm - 3:00 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1EAC Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium] || ||Pacific Salon 6-7 (2nd Floor) | |12:50 pm - 3:00 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1EAC Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium] || ||Pacific Salon 6-7 (2nd Floor) | ||
Line 102: | Line 102: | ||
|12:50 pm - 3:00 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1CAF Generation Challenge Program] || ||Royal Palm Salon 4,5,6 | |12:50 pm - 3:00 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1CAF Generation Challenge Program] || ||Royal Palm Salon 4,5,6 | ||
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AACC8 Accessing SGN Genomes through Tools] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AACC8 Accessing SGN Genomes through Tools] || Poster || |
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1BAFCA Annotation of the Salix purpurea L. Genome and Gene Families Important for Biomass Production] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1BAFCA Annotation of the Salix purpurea L. Genome and Gene Families Important for Biomass Production] || Poster || |
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18A9CAC7 Assembly and Annotation of the Etheostoma tallapoosae Genome] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18A9CAC7 Assembly and Annotation of the Etheostoma tallapoosae Genome] || Poster || |
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACEC5 Crop Ontology, a Resource for Enabling Access to Breeders' Data] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACEC5 Crop Ontology, a Resource for Enabling Access to Breeders' Data] || Poster || |
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAECA Crop>pedia] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAECA Crop>pedia] || Poster || |
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAFCB Hymenoptera Genome Database: 2014 Update] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAFCB Hymenoptera Genome Database: 2014 Update] || Poster || |
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAFCD Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated By the Research Communities] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AAFCD Liverwort Genome Analysis Using DDBJ Pipeline and Construction of the Database Annotated By the Research Communities] || Poster || |
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACBC7 Re-Annotation of the Strawberry (Fragaria vesca) Genome] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=18AACBC7 Re-Annotation of the Strawberry (Fragaria vesca) Genome] || Poster || |
|- | |- | ||
− | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AACCA The Legume Information System 2014] || | + | |3:00 pm - 4:30 pm || [http://pag14.mapyourshow.com/5_0/myshow/event_view.cfm?ScheduledSessionID=1AACCA The Legume Information System 2014] || Poster || |
|- colspan=4 | |- colspan=4 | ||
| '''Tuesday 14th January''' | | '''Tuesday 14th January''' |
Revision as of 17:16, 9 January 2014
There is plenty of GMOD content at the Plant and Animal Genomes (PAG) conference in January 2014. In addition to the day-long workshop on GMOD tools, there are also posters and presentations from many GMOD users, as well as from developers of GMOD tools.
Core GMOD Content
There are a number of items focussed on the tools and services that GMOD provides. These are:
Date | Time | Session | Location | Topic |
---|---|---|---|---|
11 Jan. (Sat.) | 1:30 pm - 3:40 pm | Generic Genome Browser Workshop | California | GBrowse |
11 Jan. (Sat.) | 4:00 pm - 6:10 pm | Next Generation Genome Annotation and Analysis | Towne | MAKER |
13 Jan. (Mon.) | 10:00 am - 11:30 am | GMOD in the Cloud and GMOD in a Box Poster | Grand Exhibit Hall | see poster title |
14 Jan (Tues.) | 4:00 pm - 6:10 pm | Galaxy for NGS Data Analysis: A Hands-on Workshop | California | Galaxy |
15 Jan. (Wed.) | 10:30 am - 5:00 pm | GMOD Workshop | Golden West | see below |
All Day GMOD Workshop
The GMOD workshop on Wednesday January 15th will be held in the Golden West room. The schedule will be as follows:
Please note that the schedule on the PAG website does not include a lunch break. Please use the schedule below instead!
10:30 AM - 11:10 AM | W395 - GMOD in the Cloud | Scott Cain, GMOD Coordinator |
11:10 AM - 11:50 AM | W396 - URGI Plant and Fungi Platform: Distributed Resources through GMOD Tools | URGI team |
11:50 AM - 12:30 PM | W397 - Galaxy CloudMan: A Gentle Introduction to Data Analysis on the Cloud | Dave Clements Galaxy Project |
1:30 PM - 2:10 PM | W398 - JBrowse: A Next-Generation Genome Browser | Robert Buels, JBrowse developer |
2:10 PM - 2:50 PM | W399 - MAKER | Carson Holt, MAKER developer |
3:05 PM - 3:45 PM | W400 - WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation | Robert Buels, JBrowse developer, Ed Lee WebApollo developer |
3:45 PM - 4:25 PM | W401 - Tripal | Lacey-Anne Sanderson, Stephen P. Ficklin, Tripal developers |
GMOD Consumers and Providers
There are also many groups who use GMOD components showing posters, and giving presentations and workshops; here is a small selection: