Difference between revisions of "PAG 2012"
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| − | + | [[File:Paglogo.gif|right|link=http://www.intl-pag.org/|PAG 2012 Conference]] | |
| − | + | GMOD had a strong presence at the [http://www.intl-pag.org/ Plant and Animal Genome Conference (PAG XX)]. '''There was again an all-day dedicated [[#About GMOD Components|GMOD Workshop]] at PAG.''' The workshop was in addition to the hands-on GBrowse tutorial that was also offered. As in past years (see [[PAG 2011|2011]], [[PAG 2010|2010]], [[PAG 2009|2009]]), there were also many workshops, computer demos, and posters, either about GMOD and [[GMOD Components]], or using GMOD components. | |
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! rowspan="1" | Computer & Training Workshop | ! rowspan="1" | Computer & Training Workshop | ||
! rowspan="1" | 1:30-3:40 | ! rowspan="1" | 1:30-3:40 | ||
| − | | '''The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own [[GBrowse]]''', [[User:Scott|Scott Cain]] | + | | '''The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own [[GBrowse]]''', [[User:Scott|Scott Cain]]. Get the [ftp://ftp.gmod.org/pub/gmod/Meetings/2012/PAG/gmod_pag_2012.tar.bz2 VMware image via ftp] |
| [[GBrowse]] | | [[GBrowse]] | ||
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! 10:30-11:30 | ! 10:30-11:30 | ||
| − | | '''[[Galaxy]]''' | + | | '''[[Galaxy]]''' ([[Media:PAG2012GalaxyIntroTalk.pdf|PDF]]) |
| [[User:Clements|Dave Clements]] | | [[User:Clements|Dave Clements]] | ||
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| Computer Demos | | Computer Demos | ||
| 11:35-11:50 | | 11:35-11:50 | ||
| − | | [http://pag.confex.com/pag/xx/webprogram/Paper3329.html MAPHiTS: an efficient workflow for SNP detection], Marc Bras | + | | [http://pag.confex.com/pag/xx/webprogram/Paper3329.html MAPHiTS: an efficient workflow for SNP detection], Marc Bras ([[Media:PAG2012MAPHiTSTalk.pdf|PDF]], [http://urgi.versailles.inra.fr/download/w_other/MAPHiTS-PAG_DemoFinal.m4v Video (no sound)]) |
| [[Galaxy]] | | [[Galaxy]] | ||
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! rowspan="1" valign="top" | ODD Numbered Poster Session<br>Monday<br />Jan 16 | ! rowspan="1" valign="top" | ODD Numbered Poster Session<br>Monday<br />Jan 16 | ||
! rowspan="1" valign="top" | 3:00-4:30 | ! rowspan="1" valign="top" | 3:00-4:30 | ||
| − | | [http://pag.confex.com/pag/xx/webprogram/Paper2789.html | + | | [http://pag.confex.com/pag/xx/webprogram/Paper2789.html P987: GMOD in the Cloud], [[User:Scott|Scott Cain]] ([[Media:PAG2012GMODInTheCloud.pdf|PDF]]) |
| [[Chado]], [[Ergatis]], [[Galaxy]], [[GBrowse]], [[JBrowse]], [[Tripal]] | | [[Chado]], [[Ergatis]], [[Galaxy]], [[GBrowse]], [[JBrowse]], [[Tripal]] | ||
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|} | |} | ||
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== See Also == | == See Also == | ||
Latest revision as of 18:18, 2 October 2012
GMOD had a strong presence at the Plant and Animal Genome Conference (PAG XX). There was again an all-day dedicated GMOD Workshop at PAG. The workshop was in addition to the hands-on GBrowse tutorial that was also offered. As in past years (see 2011, 2010, 2009), there were also many workshops, computer demos, and posters, either about GMOD and GMOD Components, or using GMOD components.
About GMOD Components
Talks that prominently feature GMOD components.
| Day | Track | Time | Title & Presenter | Components | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Saturday Jan 14 |
Workshop | 10:20-12:30 | DNA Subway, Jason Williams, Uwe Hilgert, Sheldon McKay | Apollo, GBrowse | ||||||||||||||||||||
| Sunday Jan 15 |
Computer & Training Workshop | 1:30-3:40 | The Generic Genome Browser: A Hands on Workshop for Installing, Configuring and Using Your Own GBrowse, Scott Cain. Get the VMware image via ftp | GBrowse | ||||||||||||||||||||
| Cloud Computing Workshop | 1:40-2:10 | The Galaxy Platform: running analyses in the cloud, Dannon Baker | Galaxy | |||||||||||||||||||||
| Monday Jan 16 |
||||||||||||||||||||||||
| Tuesday Jan 17 |
Computer & Training Workshop | 3:50-6:00 | Using Gramene: A Genomics and Genetics Resource for Rice and other Grasses, Ken Youens-Clark, Taner Sen | CMap, Pathway Tools | ||||||||||||||||||||
| Wednesday Jan 18 |
GMOD Tutorial | 10:20-5:00, Scott Cain Pacific Salon 3
| ||||||||||||||||||||||
Projects Using GMOD Components
| Day | Track | Time | Title & Presenter | Components |
|---|---|---|---|---|
| Saturday Jan 14 |
Computer Demos | 1:30-3:40 | ||
| Sunday Jan 15 |
Computer Demos | 3:50-6:00 | ||
| Monday Jan 16 |
Computer Demos | 12:50-3:00 | ||
| Tuesday Jan 17 |
Workshop | |||
| Wednesday Jan 18 |
Computer Demos | 11:35-11:50 | MAPHiTS: an efficient workflow for SNP detection, Marc Bras (PDF, Video (no sound)) | Galaxy |
Posters
| Track | Time | Title & Author | Components |
|---|---|---|---|
| EVEN Numbered Poster Session Monday Jan 16 |
10:00-11:30 | P698: Developing Tools for Genomic Analysis in a Wide Bulb Onion (Allium cepa L.) Cross, John McCallum | Galaxy |
| P936: DDBJ Sequence Read Archive and a cloud-computing based annotation tool for new-generation sequencing data, Hideki Nagasaki | Galaxy | ||
| Track | Time | Title & Author | Components |
| ODD Numbered Poster Session Monday Jan 16 |
3:00-4:30 | P987: GMOD in the Cloud, Scott Cain (PDF) | Chado, Ergatis, Galaxy, GBrowse, JBrowse, Tripal |
