PAG 2010
From GMOD
PAG 2010 Conference | http://www.intl-pag.org/}} | GMOD once again had a strong presence at the Plant and Animal Genome Conference (PAG 2010). There were many workshops, computer demos, and posters, either about GMOD and GMOD Components, or using GMOD components. This page lists the subset that mentioned GMOD or GMOD components in the abstract. |
---|
About GMOD Components
Projects Using GMOD Components
Day | Track | Time | Title & Author | Components |
---|---|---|---|---|
Saturday Jan 9 |
Workshop | 8:45-9:05 | Full Genome Sequencing Of The Woodland Strawberry, Fragaria vesca, Vladimir Shulaev | GBrowse |
11:40-12:00 | [[Media:PAG2010CMap3D.pdf|http://www.intl-pag.org/18/abstracts/W14_PAGXVIII_102.html Development Of Tools For The Analysis And Visualisation Of Second Generation Sequencing Data For Brassica Species], Chris Duran | CMap (CMap3D) | ||
4:10-4:30 | The Rice Annotation Project Database (RAP-DB): IRGSP/RAP Build 5 Annotation, Takeshi Itoh | GBrowse_syn | ||
Sunday Jan 10 |
Workshop | 8:20-8:40 | Epigenomic Analysis Of Populus trichocarpa Tissues From Differing Developmental Stages, Kelly J. Vining | GBrowse |
11:30-12:00 | The Bovine Gene Atlas, Tad Sonstegard | GBrowse | ||
2:15-2:30 | ConiferGDB: Current Status And Future Direction, Chun Liang | CMap | ||
3:50-6:00 | TAIR Workshop, Eva Huala | GBrowse, GBrowse_syn | ||
Computer Demo | 4:10-4:30 | MaizeGDB: Tools and Resources, Carson Andorf | CMap, GBrowse | |
4:30-4:50 | How to Use MetaCyc, a Reference Database for Metabolism, and SolCyc, a Collection of Pathway Databases for the Solanaceae, on the Web and Using Pathway Tools, Lukas Mueller | Pathway Tools | ||
4:50-5:10 | GDR in Drupal: Facilitating Community Building and Efficient Maintenance, Sook Jung | Chado, Tripal | ||
5:10-5:30 | The Soybean Genome Database (SoyGD) Genomic Interactome Viewer, David Lightfoot | GBrowse | ||
5:30-5:50 | PhaseolusGenes: A Genomics Information Management And Marker Discovery Toolkit For A Non-Model Organism, Dawei Lin | CMap, GBrowse | ||
5:50-6:10 | Community Curation Software at the Sol Genomics Network (solgenomics.net), Lukas Mueller | Chado | ||
Monday Jan 11 |
Computer Demo | 1:50-2:10 | TreeGenes: A Forest Tree Genome Database, Jill Wegrzyn | CMap |
Tuesday Jan 12 |
Workshop | 11:55-12:10 | Towards A Bioinformatics Platform For The Musa Research Community, Mathieu Rouard | CMap, GBrowse |
Posters
Titles of sessions that are about GMOD Components are shown in bold.
Track | Time | Title & Author | Components |
---|---|---|---|
EVEN Numbered Poster Session Monday Jan 11 |
10:00-11:30 | P150: The Use Of BES And Genome Sequence Derived Microsatellite Markers For QTL Discovery, Rabia Bashir, Samreen Kazi, David A Lightfoot | GBrowse |
P786: Bioinformatics Tools For Avian Genomics, Carl J Schmidt, Catalina O Tudor, li Jin, Keith S. Decker, Fiona McCarthy, Peter D'Eustachio, K-Vijay Shanker | GBrowse | ||
P830: The Hymenoptera Genome Database, Monica C. Munoz-Torres, Justin T. Reese, Christopher P. Childers, Anna K. Bennet, Jaideep P. Sundaram, Donald C Vile, Christine G. Elsik | Apollo, Chado | ||
P832: Design And Implementation Of The Cacao Genome Database, Ping Zheng, Sook Jung, Margaret Staton, Randall Svancera, Taein Lee, Stephen Ficklin, David N. Kuhn, Raymond J. Schnell, Juan Carlos Montamayor, Dorrie Main | Chado, Tripal | ||
P838: Bovine Genome Database Systems Infrastructure, Jaideep P. Sundaram, Christopher P. Childers, Justin T. Reese, Donald C. Vile, Christine G. Elsik | Chado | ||
P842: The Bovine Genome Database, Christopher P. Childers, Justin T. Reese, Jaideep P. Sundaram, Donald C. Vile, Darren E. Hagen, Anna K. Bennett, Christine G. Elsik | Apollo, Chado, GBrowse, GMODTools, XORT | ||
P858: GBrowse And Next Generation Sequencing Data, Scott Cain, Dave Clements, Lincoln Stein, the GMOD Consortium | GBrowse | ||
P914: The Rice Annotation Project Database (RAP-DB): IRGSP/RAP Build 5 Annotation, Takeshi Itoh, Tsuyoshi Tanaka, Hiroaki Sakai, Hisataka Numa, Naoki Amano, Hiroshi Ikawa, Takashi Matsumoto | GBrowse_syn | ||
Track | Time | Title & Author | Components |
ODD Numbered Poster Session Monday Jan 11 |
3:00-4:30 | P016: Analysis Of Genomic Sequences From Lupinus luteus L., Héctor A Urbina Saavedra, Marcos R Olivos Trujillo, Cristell S Navarro Navarro, Lorena B Parra González, Gabriela A Aravena Abarzúa, Joshua A Udall, Shannon C Straub, Haroldo E Salvo Garrido, Iván J Maureira Butler | GBrowse |
P295: Wheat Genomic Data In GnpIS The URGI Information System Michael Alaux, Daphné Verdelet, Aminah-Olivia Keliet, Erik Kimmel, Baptiste Brault, Nacer Mohellibi, Benoit Hilselberger, Sophie Durand, Isabelle Luyten, Sébastien Reboux, Delphine Steinbach | GBrowse | ||
P513: Populus trichocarpa Epigenomics: Analysis Of The Developmental Poplar Methylome, Kelly J. Vining, Kyle R. Pomraning, Larry Wilhelm, Palitha D. Dharmawardhana, Henry D. Priest, Olga Shevchenko, Cathleen Ma, Ruoqing Zhu, Elizabeth Etherington, Todd Mockler, Michael Freitag, Steven Strauss | GBrowse | ||
P537: QTL, Hypothalamic-Transcriptome, And Candidate Gene Query Suggest Bovine Chromosome 2 Influences Heifer Pregnancy, Milton G Thomas, Sunday O Peters, Kadir Kazilkaya, Dorian J Garrick, Rohan L Fernando, James M Reecy, Z-L Hu, Faye D Schilkey, Robert L Weaber, Gail A Silver | GBrowse | ||
P599: Segmental Duplications In Pig Genome, Zhi-Qiang Du , Danielle M. Gorbach , Zhiliang Hu , Max F. Rothschild | BioMart | ||
P823: BRISKA: Brassica Seed Knowledge Base, Hugo Berube, Alain Tchagang, Yunli Wang, Ziying Liu, Sieu Phan, Fazel Famili, Youlian Pan | Chado | ||
P833: QTL Analysis, Visualization And The Link To Genomes At SGN Database, Isaak Y Tecle, Naama Menda, Robert Buels, Lukas Mueller | GBrowse | ||
P839: How To Use The New Functionalities At MaizeGDB: Now Sequence-Centric!, Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, Carson M. Andorf, Ethalinda Cannon, Darwin A. Campbell, Lawrence Carolyn J. | GBrowse | ||
P851: SNPlotz: A Genome Plot Tool For SNP Association Studies, Zhi-Liang Hu, Rex Fernando, Dorian Garrick, James M. Reecy | GBrowse | ||
P859: Visualizing And Comparing Genomes, Ken Youens-Clark, Immanual V. Yap, Doreen Ware | CMap | ||
P861: Comparative Genomics Tools In GMOD, Dave Clements, Sheldon McKay, Ken Youens-Clark, Ben Faga, Scott Cain | CMap, GBrowse_syn, Sybil, SynView, Apollo | ||
P915: GDR In Drupal: Facilitating Community Building And Efficient Maintenance, Sook Jung, Randall Svancara, Meg Staton, Stephen Ficklin, Ping Zheng, Taein Lee, Dorrie Main | GBrowse | ||
P917: PhaseolusGenes: A Genomics Information Management And Marker Discovery Toolkit For A Non-Model Organism, Dawei Lin, Paul Gepts, Adam Schaal, Jose Boveda, JVG dos Santos, Joe Fass, Jim Kami, Nikhil Joshi, Monica Britton, Zhiwei Lu | CMap, GBrowse | ||
P919: Using The JBrowse Genome Browser With Large Amounts Of Data, Mitchell E Skinner, Andrew V Uzilov, Lincoln D Stein, Christopher J Mungall, Ian H Holmes | JBrowse | ||
P921: TreeGenes: A Forest Tree Genome Database, Jill L Wegrzyn, Ben Figueroa, Minyoung Choi, Elly Y Chen, David B Neale | CMap |
See Also
- The January 2010 GMOD Meeting immediately followed PAG 2010.
- GMOD @ PAG 2010 Flier listing highlights from above.
- PAG 2009