Difference between revisions of "PAG 2010"
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− | + | [[File:Paglogo.gif|link=http://www.intl-pag.org/|right|PAG 2010 Conference]] | |
− | + | GMOD once again had a strong presence at the [http://www.intl-pag.org/ Plant and Animal Genome Conference (PAG XVIII)]. There were many workshops, computer demos, and posters, either about GMOD and [[GMOD Components]], or using GMOD components. This page lists the subset that mentioned GMOD or GMOD components in the abstract. | |
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== About GMOD Components == | == About GMOD Components == | ||
+ | |||
+ | [[File:PAG2010MAKERSession.jpg|thumb|300px|[[User:Carsonholt|Carson Holt]] presenting the [[MAKER]] genome annotation pipeline at PAG.]] | ||
+ | |||
+ | There were a record nine talks and workshops either entirely or partially about [[GMOD Components]]. It was the first time [[:Image:PAG2010Galaxy.pdf|Galaxy]], [[MAKER PAG 2010 Workshop|MAKER]], and [[:Image:PAG2010JBrowse.pdf|JBrowse]] were presented at PAG. We also gave our first [[:Image:PAG2010GMODProjectUpdate.pdf|GMOD overview talk]] at PAG. There was a great dead of interest in GMOD and ll of the talks were well attended, with several of them being standing room only. | ||
{| class="wikitable" | {| class="wikitable" | ||
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! rowspan="2" | Computer & Training Workshop | ! rowspan="2" | Computer & Training Workshop | ||
! 1:30-2:30 | ! 1:30-2:30 | ||
− | ! [ | + | ! [[:Image:PAG2010Galaxy.pdf|Animal Genomics with Galaxy: Analyze, Publish, and Visualize]], [[User:DanB|Dan Blankenberg]] |
| [[Galaxy]] | | [[Galaxy]] | ||
|- | |- | ||
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! rowspan="2" | Computer & Training Workshop | ! rowspan="2" | Computer & Training Workshop | ||
! rowspan="1" | 12:50-1:10 | ! rowspan="1" | 12:50-1:10 | ||
− | ! [[:Image:PAG2010GMODProjectUpdate.pdf|GMOD Project Update]], [[User:Clements|Dave Clements]] | + | ! [[:Image:PAG2010GMODProjectUpdate.pdf|GMOD Project Update]], [[User:Clements|Dave Clements]], [[User:Scott|Scott Cain]] |
| [[GMOD Components]] | | [[GMOD Components]] | ||
|- | |- | ||
! 1:10-1:30 | ! 1:10-1:30 | ||
− | ! [ | + | ! [[:Image:PAG2010JBrowse.pdf|Using the JBrowse Genome Browser with Large Amounts of Data]], [[User:MitchSkinner|Mitch Skinner]] |
| [[JBrowse]] | | [[JBrowse]] | ||
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! 2:30-2:50 | ! 2:30-2:50 | ||
− | ! [[Tripal | + | ! [[Media:PAG2010Tripal.pdf|Tripal: a Construction Toolkit for Online Genomic Databases]], [[User:Sficklin|Stephen Ficklin]] |
| [[Tripal]], [[Chado]] | | [[Tripal]], [[Chado]] | ||
|} | |} | ||
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|- | |- | ||
! 4:50-5:10 | ! 4:50-5:10 | ||
− | ! GDR in Drupal: Facilitating Community Building and Efficient Maintenance, Sook Jung | + | ! [[:Image:PAG2010GDRinDrupal.pdf|GDR in Drupal: Facilitating Community Building and Efficient Maintenance]], Sook Jung |
| [[Chado]], [[Tripal]] | | [[Chado]], [[Tripal]] | ||
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| [[GBrowse]] | | [[GBrowse]] | ||
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− | | [ | + | | [[:Image:PAG2010HymenopteraGenomeDatabse.pdf|P830: The ''Hymenoptera'' Genome Database]], Monica C. Munoz-Torres, Justin T. Reese, [[User:Childers|Christopher P. Childers]], Anna K. Bennet, Jaideep P. Sundaram, Donald C Vile, Christine G. Elsik |
− | | [[Apollo]], [[Chado]] | + | | [[Apollo]], [[Chado]], [[GBrowse]], [[GMODTools]]. [[XORT]] |
|- | |- | ||
| [http://www.intl-pag.org/18/abstracts/P08a_PAGXVIII_832.html P832: Design And Implementation Of The Cacao Genome Database], Ping Zheng, Sook Jung, Margaret Staton, Randall Svancera, Taein Lee, [[User:Sficklin|Stephen Ficklin]], David N. Kuhn, Raymond J. Schnell, Juan Carlos Montamayor, Dorrie Main | | [http://www.intl-pag.org/18/abstracts/P08a_PAGXVIII_832.html P832: Design And Implementation Of The Cacao Genome Database], Ping Zheng, Sook Jung, Margaret Staton, Randall Svancera, Taein Lee, [[User:Sficklin|Stephen Ficklin]], David N. Kuhn, Raymond J. Schnell, Juan Carlos Montamayor, Dorrie Main | ||
| [[Chado]], [[Tripal]] | | [[Chado]], [[Tripal]] | ||
|- | |- | ||
− | | [ | + | | [[:Image:PAG2010BovineGenomeDatabaseInfra.pdf| P838: Bovine Genome Database Systems Infrastructure]], Jaideep P. Sundaram, Christopher P. Childers, Justin T. Reese, Donald C. Vile, Christine G. Elsik |
| [[Chado]] | | [[Chado]] | ||
|- | |- | ||
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| [[CMap]] | | [[CMap]] | ||
|} | |} | ||
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+ | == Flier == | ||
+ | * The [[:Image:GMODatPAG2010.pdf|GMOD @ PAG 2010 Flier]] highlights the presentations above, and was distributed at the conference. | ||
== See Also == | == See Also == | ||
+ | * [[PAG 2012]] | ||
+ | * [[PAG 2011]] | ||
* The [[January 2010 GMOD Meeting]] immediately followed PAG 2010. | * The [[January 2010 GMOD Meeting]] immediately followed PAG 2010. | ||
− | |||
* [[PAG 2009]] | * [[PAG 2009]] | ||
− | |||
[[Category:Education and Outreach]] | [[Category:Education and Outreach]] | ||
+ | [[Category:Conferences]] |
Latest revision as of 18:17, 2 October 2012
GMOD once again had a strong presence at the Plant and Animal Genome Conference (PAG XVIII). There were many workshops, computer demos, and posters, either about GMOD and GMOD Components, or using GMOD components. This page lists the subset that mentioned GMOD or GMOD components in the abstract.
About GMOD Components
There were a record nine talks and workshops either entirely or partially about GMOD Components. It was the first time Galaxy, MAKER, and JBrowse were presented at PAG. We also gave our first GMOD overview talk at PAG. There was a great dead of interest in GMOD and ll of the talks were well attended, with several of them being standing room only.
Projects Using GMOD Components
Posters
Titles of sessions that are about GMOD Components are shown in bold.
Track | Time | Title & Author | Components |
---|---|---|---|
EVEN Numbered Poster Session Monday Jan 11 |
10:00-11:30 | P150: The Use Of BES And Genome Sequence Derived Microsatellite Markers For QTL Discovery, Rabia Bashir, Samreen Kazi, David A Lightfoot | GBrowse |
P786: Bioinformatics Tools For Avian Genomics, Carl J Schmidt, Catalina O Tudor, li Jin, Keith S. Decker, Fiona McCarthy, Peter D'Eustachio, K-Vijay Shanker | GBrowse | ||
P830: The Hymenoptera Genome Database, Monica C. Munoz-Torres, Justin T. Reese, Christopher P. Childers, Anna K. Bennet, Jaideep P. Sundaram, Donald C Vile, Christine G. Elsik | Apollo, Chado, GBrowse, GMODTools. XORT | ||
P832: Design And Implementation Of The Cacao Genome Database, Ping Zheng, Sook Jung, Margaret Staton, Randall Svancera, Taein Lee, Stephen Ficklin, David N. Kuhn, Raymond J. Schnell, Juan Carlos Montamayor, Dorrie Main | Chado, Tripal | ||
P838: Bovine Genome Database Systems Infrastructure, Jaideep P. Sundaram, Christopher P. Childers, Justin T. Reese, Donald C. Vile, Christine G. Elsik | Chado | ||
P842: The Bovine Genome Database, Christopher P. Childers, Justin T. Reese, Jaideep P. Sundaram, Donald C. Vile, Darren E. Hagen, Anna K. Bennett, Christine G. Elsik | Apollo, Chado, GBrowse, GMODTools, XORT | ||
P858: GBrowse And Next Generation Sequencing Data, Scott Cain, Dave Clements, Lincoln Stein, the GMOD Consortium | GBrowse | ||
P914: The Rice Annotation Project Database (RAP-DB): IRGSP/RAP Build 5 Annotation, Takeshi Itoh, Tsuyoshi Tanaka, Hiroaki Sakai, Hisataka Numa, Naoki Amano, Hiroshi Ikawa, Takashi Matsumoto | GBrowse_syn | ||
Track | Time | Title & Author | Components |
ODD Numbered Poster Session Monday Jan 11 |
3:00-4:30 | P016: Analysis Of Genomic Sequences From Lupinus luteus L., Héctor A Urbina Saavedra, Marcos R Olivos Trujillo, Cristell S Navarro Navarro, Lorena B Parra González, Gabriela A Aravena Abarzúa, Joshua A Udall, Shannon C Straub, Haroldo E Salvo Garrido, Iván J Maureira Butler | GBrowse |
P295: Wheat Genomic Data In GnpIS The URGI Information System Michael Alaux, Daphné Verdelet, Aminah-Olivia Keliet, Erik Kimmel, Baptiste Brault, Nacer Mohellibi, Benoit Hilselberger, Sophie Durand, Isabelle Luyten, Sébastien Reboux, Delphine Steinbach | GBrowse | ||
P513: Populus trichocarpa Epigenomics: Analysis Of The Developmental Poplar Methylome, Kelly J. Vining, Kyle R. Pomraning, Larry Wilhelm, Palitha D. Dharmawardhana, Henry D. Priest, Olga Shevchenko, Cathleen Ma, Ruoqing Zhu, Elizabeth Etherington, Todd Mockler, Michael Freitag, Steven Strauss | GBrowse | ||
P537: QTL, Hypothalamic-Transcriptome, And Candidate Gene Query Suggest Bovine Chromosome 2 Influences Heifer Pregnancy, Milton G Thomas, Sunday O Peters, Kadir Kazilkaya, Dorian J Garrick, Rohan L Fernando, James M Reecy, Z-L Hu, Faye D Schilkey, Robert L Weaber, Gail A Silver | GBrowse | ||
P599: Segmental Duplications In Pig Genome, Zhi-Qiang Du , Danielle M. Gorbach , Zhiliang Hu , Max F. Rothschild | BioMart | ||
P823: BRISKA: Brassica Seed Knowledge Base, Hugo Berube, Alain Tchagang, Yunli Wang, Ziying Liu, Sieu Phan, Fazel Famili, Youlian Pan | Chado | ||
P833: QTL Analysis, Visualization And The Link To Genomes At SGN Database, Isaak Y Tecle, Naama Menda, Robert Buels, Lukas Mueller | GBrowse | ||
P839: How To Use The New Functionalities At MaizeGDB: Now Sequence-Centric!, Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, Carson M. Andorf, Ethalinda Cannon, Darwin A. Campbell, Lawrence Carolyn J. | GBrowse | ||
P851: SNPlotz: A Genome Plot Tool For SNP Association Studies, Zhi-Liang Hu, Rex Fernando, Dorian Garrick, James M. Reecy | GBrowse | ||
P859: Visualizing And Comparing Genomes, Ken Youens-Clark, Immanual V. Yap, Doreen Ware | CMap | ||
P861: Comparative Genomics Tools In GMOD, Dave Clements, Sheldon McKay, Ken Youens-Clark, Ben Faga, Scott Cain | CMap, GBrowse_syn, Sybil, SynView, Apollo | ||
P915: GDR In Drupal: Facilitating Community Building And Efficient Maintenance, Sook Jung, Randall Svancara, Meg Staton, Stephen Ficklin, Ping Zheng, Taein Lee, Dorrie Main | GBrowse | ||
P917: PhaseolusGenes: A Genomics Information Management And Marker Discovery Toolkit For A Non-Model Organism, Dawei Lin, Paul Gepts, Adam Schaal, Jose Boveda, JVG dos Santos, Joe Fass, Jim Kami, Nikhil Joshi, Monica Britton, Zhiwei Lu | CMap, GBrowse | ||
P919: Using The JBrowse Genome Browser With Large Amounts Of Data, Mitchell E Skinner, Andrew V Uzilov, Lincoln D Stein, Christopher J Mungall, Ian H Holmes | JBrowse | ||
P921: TreeGenes: A Forest Tree Genome Database, Jill L Wegrzyn, Ben Figueroa, Minyoung Choi, Elly Y Chen, David B Neale | CMap |
Flier
- The GMOD @ PAG 2010 Flier highlights the presentations above, and was distributed at the conference.
See Also
- PAG 2012
- PAG 2011
- The January 2010 GMOD Meeting immediately followed PAG 2010.
- PAG 2009