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GMOD @ ISMB 2008
July 18-23
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New & Revised Pages

GSOC Project Ideas 2024News/Prospecting for Proposals for GSoC 2024GSoCGSOC Applications GuideSource Code RepositoriesJBrowse2 Tutorial PAG 2024PAG2023 bash scriptPAG2024 bash scriptSeven Knights Idle Adventure Unlimited Rubies GeneratorMogul Cloud Cheats Latest Version 2023 New Generator Gems (Unique)

Popular GMOD Tools

Genome Browsing and Editing
  Apollo: Genome annotation editor
  GBrowse: Genome annotation viewer
Comparative Genomics
  CMap: Comparative map viewer
  Sybil: Comparative genome viewer
Database Tools
  Chado: Biological database schema
  BioMart: Data mining system
  GMODTools: Chado to Fasta, GFF, ...
Biological Pathways
  Pathway Tools: Metabolic, regulatory
Infrastructure
  GMODWeb: Website for Chado DBs
  Modware: Middleware for Chado

Welcome to GMOD

GMOD is the Generic Model Organism Database project, a collection of open source software tools for creating and managing genome-scale biological databases. You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at many large and small community databases.

How do I Get Started?

For a project overview see GMOD for the Biologist. For an introduction to specific GMOD components see the list of the most popular tools at the right, or visit GMOD Components for a comprehensive list of GMOD tools. If GMOD looks promising for your needs, consider attending the next GMOD meeting.

How do I Get Support?

GMOD support is available from several different sources. Finding Support introduces each support option (this web site, GMOD Mailing Lists, and the GMOD Help Desk) and offers guidance on which one is the most appropriate for your question.

How do I Get Involved?

As an open source project GMOD relies on the donation of time and software by groups and individuals. Contribution of new tools, adoption of existing ones, and improving the documentation are all welcome. Existing and potential users are encouraged to provide feedback via mailing lists or the help desk. The GMOD Project Page lists projects in need of ideas and developers.

You can also attend project meetings. The next meeting will likely be in January 2009. The most recent meeting was the July 2008 GMOD Meeting.

Contributing Organizations

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