Difference between revisions of "Main Page"
From GMOD
m (→<font color="navy blue">Welcome to GMOD</font>: Converted news list from hard-coded to be fed from GMOD News Feed) |
m |
||
| Line 2: | Line 2: | ||
__NOTOC__ | __NOTOC__ | ||
<!-- Define the right hand sidebar. | <!-- Define the right hand sidebar. | ||
| − | - News: List from GMOD News RSS feed, defined on GMOD News page. | + | - News: List from GMOD News RSS feed, defined on GMOD News page. |
- Lists first 9 news items | - Lists first 9 news items | ||
| − | - New & Revised pages: Automatically populated from Special:Recentchanges. | + | - New & Revised pages: Automatically populated from Special:Recentchanges. |
| − | - Lists last 10 changes/additions and EXCLUDES minor edits. | + | - Lists last 10 changes/additions and EXCLUDES minor edits. |
| − | - Popular GMOD Tools: This list changes slowly and is manually maintained | + | - Popular GMOD Tools: This list changes slowly and is manually maintained |
- by the GMOD help desk. | - by the GMOD help desk. | ||
--> | --> | ||
| Line 13: | Line 13: | ||
| <span class="plainlinks">'''[[GMOD News]]''' [http://gmod.org/wiki/index.php?title=GMOD_News&action=feed&feed=rss http://gmod.org/wiki/images/4/47/RSSIcon16x16.gif]</span> | | <span class="plainlinks">'''[[GMOD News]]''' [http://gmod.org/wiki/index.php?title=GMOD_News&action=feed&feed=rss http://gmod.org/wiki/images/4/47/RSSIcon16x16.gif]</span> | ||
|- align="center" | |- align="center" | ||
| − | | | + | | |
<rss>http://www.gmod.org/wiki/index.php?title=GMOD_News&action=feed&feed=rss|title=none|template=HomePageNewsFeed|max=9</rss> | <rss>http://www.gmod.org/wiki/index.php?title=GMOD_News&action=feed&feed=rss|title=none|template=HomePageNewsFeed|max=9</rss> | ||
|- align="center" bgcolor="lightblue" | |- align="center" bgcolor="lightblue" | ||
| Line 20: | Line 20: | ||
| | | | ||
<news unique nominor nobot namespaces="main"> | <news unique nominor nobot namespaces="main"> | ||
| − | • [[{{{pagename}}}]] | + | • [[{{{pagename}}}]] |
</news> | </news> | ||
|- align="center" bgcolor="lightblue" | |- align="center" bgcolor="lightblue" | ||
| '''Popular GMOD Tools''' | | '''Popular GMOD Tools''' | ||
| − | |- | + | |- |
| − | | | + | | |
'''Genome Browsing and Editing''' | '''Genome Browsing and Editing''' | ||
<br /> [[Apollo|Apollo: Genome annotation editor]] | <br /> [[Apollo|Apollo: Genome annotation editor]] | ||
| − | <br /> [[GBrowse|GBrowse: Genome annotation viewer]] | + | <br /> [[GBrowse|GBrowse: Genome annotation viewer]] |
<br />'''Comparative Maps''' | <br />'''Comparative Maps''' | ||
| − | <br /> [[CMap|CMap: Comparative map viewer]] | + | <br /> [[CMap|CMap: Comparative map viewer]] |
| − | <br /> [[Sybil|Sybil: Comparative genome viewer]] | + | <br /> [[Sybil|Sybil: Comparative genome viewer]] |
<br />'''Database Tools''' | <br />'''Database Tools''' | ||
<br /> [[Chado|Chado: Biological database schema]] | <br /> [[Chado|Chado: Biological database schema]] | ||
| − | <br /> [[BioMart|BioMart: Data mining system]] | + | <br /> [[BioMart|BioMart: Data mining system]] |
| − | <br /> [[GMODTools|GMODTools: Chado to Fasta, GFF, ...]] | + | <br /> [[GMODTools|GMODTools: Chado to Fasta, GFF, ...]] |
<br />'''Biological Pathways''' | <br />'''Biological Pathways''' | ||
<br /> [[Pathway Tools|Pathway Tools: Metabolic, regulatory]] | <br /> [[Pathway Tools|Pathway Tools: Metabolic, regulatory]] | ||
<br />'''Infrastructure''' | <br />'''Infrastructure''' | ||
| − | <br /> [[GMODWeb|GMODWeb: Website for Chado DBs]] | + | <br /> [[GMODWeb|GMODWeb: Website for Chado DBs]] |
<br /> [[Modware|Modware: Middleware for Chado]] | <br /> [[Modware|Modware: Middleware for Chado]] | ||
|} | |} | ||
| Line 45: | Line 45: | ||
'''GMOD''' is the '''G'''eneric '''M'''odel '''O'''rganism '''D'''atabase project, a collection of open source software tools for creating and managing genome-scale biological databases. You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at [[MOD|many large and small community databases]]. | '''GMOD''' is the '''G'''eneric '''M'''odel '''O'''rganism '''D'''atabase project, a collection of open source software tools for creating and managing genome-scale biological databases. You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at [[MOD|many large and small community databases]]. | ||
| − | === | + | === How do I Get Started? === |
For a project overview see [[GMOD for the Biologist]]. For an introduction to specific GMOD components see the list of the most popular tools at the right, or visit [[GMOD_Components|GMOD Components]] for a comprehensive list of GMOD tools. | For a project overview see [[GMOD for the Biologist]]. For an introduction to specific GMOD components see the list of the most popular tools at the right, or visit [[GMOD_Components|GMOD Components]] for a comprehensive list of GMOD tools. | ||
| − | === | + | === How do I Get Support? === |
GMOD support is available from several different sources. [[Finding Support]] introduces each support option (this web site, [[GMOD Mailing Lists]], and the [[GMOD Help Desk]]) and offers guidance on which one is the most appropriate for your question. | GMOD support is available from several different sources. [[Finding Support]] introduces each support option (this web site, [[GMOD Mailing Lists]], and the [[GMOD Help Desk]]) and offers guidance on which one is the most appropriate for your question. | ||
| − | === | + | === How do I Get Involved? === |
As an open source project GMOD relies on the donation of time and software by groups and individuals. Contribution of new tools, adoption of existing ones, and improving the documentation are all welcome. [[MOD|Existing]] and potential users are encouraged to provide feedback via [[GMOD Mailing Lists|mailing lists]] or the [[GMOD Help Desk|help desk]]. The [[GMOD Project Page]] lists projects in need of ideas and developers. | As an open source project GMOD relies on the donation of time and software by groups and individuals. Contribution of new tools, adoption of existing ones, and improving the documentation are all welcome. [[MOD|Existing]] and potential users are encouraged to provide feedback via [[GMOD Mailing Lists|mailing lists]] or the [[GMOD Help Desk|help desk]]. The [[GMOD Project Page]] lists projects in need of ideas and developers. | ||
| Line 59: | Line 59: | ||
You can also attend project meetings. See [[November 2007 GMOD Meeting]] and [[Hackathon 2007 info]] for summaries of the two most recent meetings. | You can also attend project meetings. See [[November 2007 GMOD Meeting]] and [[Hackathon 2007 info]] for summaries of the two most recent meetings. | ||
| − | ==== | + | ==== Contributing Organizations ==== |
| − | <!-- Please scale any icons to be the same size as the | + | <!-- Please scale any icons to be the same size as the |
- existing icons before adding it to this list. | - existing icons before adding it to this list. | ||
--> | --> | ||
Revision as of 04:30, 4 February 2008
Welcome to GMOD
GMOD is the Generic Model Organism Database project, a collection of open source software tools for creating and managing genome-scale biological databases. You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at many large and small community databases.
How do I Get Started?
For a project overview see GMOD for the Biologist. For an introduction to specific GMOD components see the list of the most popular tools at the right, or visit GMOD Components for a comprehensive list of GMOD tools.
How do I Get Support?
GMOD support is available from several different sources. Finding Support introduces each support option (this web site, GMOD Mailing Lists, and the GMOD Help Desk) and offers guidance on which one is the most appropriate for your question.
How do I Get Involved?
As an open source project GMOD relies on the donation of time and software by groups and individuals. Contribution of new tools, adoption of existing ones, and improving the documentation are all welcome. Existing and potential users are encouraged to provide feedback via mailing lists or the help desk. The GMOD Project Page lists projects in need of ideas and developers.
You can also attend project meetings. See November 2007 GMOD Meeting and Hackathon 2007 info for summaries of the two most recent meetings.
Contributing Organizations
