Difference between revisions of "Main Page"

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<!-- Define the right hand sidebar.
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<div id="MainCompBox" class="componentBox">
  - News: List from GMOD News RSS feed, defined on GMOD News page.
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<div class="compBoxHdr clear">GMOD is Social</div>
  -    Lists first 9 news items
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  - New & Revised pages: Automatically populated from Special:Recentchanges.
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  -    Lists last 10 changes/additions and EXCLUDES minor edits.
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  - Popular GMOD Tools: This list changes slowly and is manually maintained
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  -    by the GMOD help desk.
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<div class="componentBox" style="width: 20em">
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<div class="compBoxHdr">[[April_2013_GMOD_Meeting|Register now!]]</div>
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[[File:Gmod-2013-mtg-alt.png|center|240px|link=http://gmod.org/wiki/April_2013_GMOD_Meeting|GMOD Community Meeting!]]
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<!-- <div class="compBoxHdr">[[GSoC|Mentors wanted for GSoC]]</div>
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[[File:Soc-logo-google-blue.jpg|center|240px|link=http://gmod.org/wiki/GSoC|Google Summer of Code: mentors wanted!]] -->
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[[File:Gmod-bird.jpg|50px|right|link=http://twitter.com/gmodproject|It's a bird! It's a plane! It's the GMOD project on Twitter!]]
 
[[File:Gmod-bird.jpg|50px|right|link=http://twitter.com/gmodproject|It's a bird! It's a plane! It's the GMOD project on Twitter!]]
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[http://www.linkedin.com/groups?gid=131368&trk=group-name Join other '''GMOD users''' on LinkedIn]
 
[http://www.linkedin.com/groups?gid=131368&trk=group-name Join other '''GMOD users''' on LinkedIn]
 
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[[File:MendeleyLogo-horiz.jpg|50px|right|link=http://mnd.ly/WwRe8F|GMOD group on Mendeley]]
 
  
Keep up with GMOD papers and contribute your own in the '''[http://mnd.ly/WwRe8F GMOD group on Mendeley]'''
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<div class="compBoxHdr">[[GMOD News]][[File:RSSIcon16x16.gif|right|link={{gmod.org.url}}?title=Special%3ANewsChannel&format=rss20&limit=20&cat1=&cat2=&excat1=&wpSubmitNewsChannelParams=Create+feed|RSS feed]]<div style="float: right; padding-right: 0.5em; font-size: 80%">[[GMOD News#Adding a News Item|Add]]</div></div><rss time="1800" number="10" desc="off" title="off">http://gmod.org/wiki?title=Special%3ANewsChannel&format=rss20&limit=20&cat1=&cat2=&excat1=&wpSubmitNewsChannelParams=Create+feed</rss>
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<div class="compBoxHdr">[[GMOD News]][[File:RSSIcon16x16.gif|right|link={{gmod.org.url}}?title=Special%3ANewsChannel&format=rss20&limit=20&cat1=&cat2=&excat1=&wpSubmitNewsChannelParams=Create+feed|RSS feed]]<div style="float: right; padding-right: 0.5em; font-size: 80%">[[GMOD News#Adding a News Item|Add]]</div></div>
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<!-- <div class="compBoxHdr">[[Special:Recentchanges|New &amp; Revised Pages]][[File:RSSIcon16x16.gif|right|link=http://gmod.org/mediawiki/index.php?title=Special:Recentchanges&feed=rss|All recent changes feed]]</div>
 
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[[{{{pagename}}}]] &bull;
 
[[{{{pagename}}}]] &bull;
 
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<div class="compBoxHdr">More GMOD</div>
 
[[File:GalaxyIsHiringWordCloud.png|center|230px|link=News/Galaxy Project Openings]]
 
 
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</div>
  
'''GMOD''' is the '''G'''eneric '''M'''odel '''O'''rganism '''D'''atabase project, a collection of open source software tools for creating and managing genome-scale biological databases. You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at [[MOD|many large and small community databases]].
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<div class="intro">
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Welcome to the '''Generic Model Organism Database''' project, a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data.<!-- You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at [[MOD|many large and small community databases]]. -->
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</div>
  
=== How do I Get Started? ===
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=== Get Started ===
  
See [[Overview]] for the big picture.  For an introduction to specific GMOD components see the list of the most popular tools at the right, or visit [[GMOD Components]] for a comprehensive list of GMOD tools.  If GMOD looks promising for your needs, consider attending the next [[Meetings|GMOD community meeting]].
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Read the [[Overview|GMOD overview]] for the big picture, or visit [[GMOD Components]] for a comprehensive list of GMOD tools.  If GMOD looks promising for your needs, consider attending the next [[Meetings|GMOD community meeting]].
  
=== How do I Get Support? ===
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=== Get Support ===
  
 
GMOD support is available from several different sources. [[Support]] introduces each support option (this web site, [[GMOD Mailing Lists]], [[Training and Outreach]] activities (including [[GMOD Schools]]), and the [[GMOD Help Desk]]) and offers guidance on which one is the most appropriate for your question.
 
GMOD support is available from several different sources. [[Support]] introduces each support option (this web site, [[GMOD Mailing Lists]], [[Training and Outreach]] activities (including [[GMOD Schools]]), and the [[GMOD Help Desk]]) and offers guidance on which one is the most appropriate for your question.
  
=== How do I Get Involved? ===
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=== Get Involved ===
  
As an open source project GMOD relies on the [[GMOD Membership|donation of time and software]] by groups and individuals.  Contribution of new tools, adoption of existing ones, and [[Site Guidelines|improving the documentation]] are all welcome. [[MOD|Existing]] and potential users are encouraged to provide feedback via [[GMOD Mailing Lists|mailing lists]] or the [[GMOD Help Desk|help desk]]. The [[GMOD Project Page]] lists projects in need of ideas and developers. You can also attend project [[meetings]]; the next is the [[April 2013 GMOD Meeting]] in Cambridge, UK.
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As an open source project GMOD relies on the [[GMOD Membership|donation of time and software]] by groups and individuals.  Contribution of new tools, adoption of existing ones, and [[Site Guidelines|improving the documentation]] are all welcome. [[MOD|Existing]] and potential users are encouraged to provide feedback via [[GMOD Mailing Lists|mailing lists]] or the [[GMOD Help Desk|help desk]]. <!-- The [[GMOD Project Page]] lists projects in need of ideas and developers.--> You can also attend project [[meetings]].
  
  
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[[File:Jbrowse2_logo.png|250px|thumb|none|link=JBrowse|JBrowse 2: New super-fast genome annotation viewer]]
 
[[File:GBrowseLogo.png|250px|thumb|none|link=GBrowse|GBrowse: Genome annotation viewer]]
 
[[File:GBrowseLogo.png|250px|thumb|none|link=GBrowse|GBrowse: Genome annotation viewer]]
 
[[File:GalaxyLogoBigger.png|250px|thumb|none|link=Galaxy|Galaxy: Data analysis & integration]]
 
[[File:GalaxyLogoBigger.png|250px|thumb|none|link=Galaxy|Galaxy: Data analysis & integration]]
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[[File:JBrowseLogo.png|250px|thumb|none|link=JBrowse|JBrowse: Super-fast genome annotation viewer]]
 
[[File:JBrowseLogo.png|250px|thumb|none|link=JBrowse|JBrowse: Super-fast genome annotation viewer]]
 
[[File:Biomart250.png|250px|thumb|none|link=BioMart|BioMart: Data mining system]]
 
[[File:Biomart250.png|250px|thumb|none|link=BioMart|BioMart: Data mining system]]
[[File:ApolloLogo.png|250px|thumb|none|link=WebApollo|WebApollo: browser-based annotation editor]]
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[[File:WebApolloLogo.png|250px|thumb|none|link=WebApollo|WebApollo: browser-based annotation editor]]
 
[[File:MAKERLogo.png|250px|thumb|none|link=MAKER|MAKER: Genome annotation pipeline]]
 
[[File:MAKERLogo.png|250px|thumb|none|link=MAKER|MAKER: Genome annotation pipeline]]
 
[[File:GBrowse_syn_logo.png|250px|thumb|none|link=GBrowse_syn|GBrowse_syn: Synteny viewer]]
 
[[File:GBrowse_syn_logo.png|250px|thumb|none|link=GBrowse_syn|GBrowse_syn: Synteny viewer]]
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[[File:CMapLogo-horiz.png|250px|thumb|none|link=CMap|CMap: Comparative map viewer]]
 
[[File:CMapLogo-horiz.png|250px|thumb|none|link=CMap|CMap: Comparative map viewer]]
 
[[File:PathwayTools.png|250px|thumb|none|link=Pathway_Tools|Pathway Tools: Metabolic, regulatory pathways]]
 
[[File:PathwayTools.png|250px|thumb|none|link=Pathway_Tools|Pathway Tools: Metabolic, regulatory pathways]]
[[File:GMODTools-Logo.png|250px|thumb|none|link=GMODTools|GMODTools: Chado to Fasta, GFF, and more!]]
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[[File:CantoTextLogo.png|250px|thumb|none|link=Canto|Canto: literature annotation tool]]
[[File:TextpressoLogo.jpg|250px|thumb|none|link=Textpresso|Textpresso: text mining]]
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[[File:GMODComponents.png|250px|thumb|none|link=GMOD_Components|Full list of GMOD components]]
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Latest revision as of 18:22, 30 March 2021

Welcome to the Generic Model Organism Database project, a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data.

Get Started

Read the GMOD overview for the big picture, or visit GMOD Components for a comprehensive list of GMOD tools. If GMOD looks promising for your needs, consider attending the next GMOD community meeting.

Get Support

GMOD support is available from several different sources. Support introduces each support option (this web site, GMOD Mailing Lists, Training and Outreach activities (including GMOD Schools), and the GMOD Help Desk) and offers guidance on which one is the most appropriate for your question.

Get Involved

As an open source project GMOD relies on the donation of time and software by groups and individuals. Contribution of new tools, adoption of existing ones, and improving the documentation are all welcome. Existing and potential users are encouraged to provide feedback via mailing lists or the help desk. You can also attend project meetings.


Popular GMOD Tools

See the full list of GMOD components

JBrowse 2: New super-fast genome annotation viewer
GBrowse: Genome annotation viewer
Galaxy: Data analysis & integration
Chado: Biological database schema
JBrowse: Super-fast genome annotation viewer
BioMart: Data mining system
WebApollo: browser-based annotation editor
MAKER: Genome annotation pipeline
GBrowse_syn: Synteny viewer
Tripal: Chado web interface
InterMine: Data warehousing
CMap: Comparative map viewer
Pathway Tools: Metabolic, regulatory pathways
Canto: literature annotation tool