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__NOTOC__
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<div id="MainCompBox" class="componentBox">
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<div class="compBoxHdr clear">GMOD is Social</div>
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[[File:Gmod-bird.jpg|50px|right|link=http://twitter.com/gmodproject|It's a bird! It's a plane! It's the GMOD project on Twitter!]]
  
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[http://twitter.com/gmodproject Follow '''The Tweet of GMOD''']<br>
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[http://twitter.com/gmodproject @gmodproject]
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[[File:LinkedInLogo-60px.png|left|link=http://www.linkedin.com/groups?gid=131368&trk=group-name|GMOD group on LinkedIn]]
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[http://www.linkedin.com/groups?gid=131368&trk=group-name Join other '''GMOD users''' on LinkedIn]
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</div>
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[[File:MendeleyLogo-horiz.jpg|50px|right|link=http://mnd.ly/WwRe8F|GMOD group on Mendeley]]
  
GMOD Meeting Schedule -- [http://www.gmod.org/meeting_registration Registration link]<br /> January 18-19, 2007<br /> Town and Country Hotel, San Diego, CA<br /> Sheffield Room
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Keep up with GMOD papers and contribute your own in the '''[http://mnd.ly/WwRe8F GMOD group on Mendeley]'''
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</div>
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<div class="compBoxHdr">[[GMOD News]][[File:RSSIcon16x16.gif|right|link={{gmod.org.url}}?title=Special%3ANewsChannel&format=rss20&limit=20&cat1=&cat2=&excat1=&wpSubmitNewsChannelParams=Create+feed|RSS feed]]<div style="float: right; padding-right: 0.5em; font-size: 80%">[[GMOD News#Adding a News Item|Add]]</div></div>
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<rss time="1800" number="10" desc="off" title="off">http://gmod.org/wiki?title=Special%3ANewsChannel&format=rss20&limit=20&cat1=&cat2=&excat1=&wpSubmitNewsChannelParams=Create+feed</rss>
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<!-- <rss max="10">http://gmod.org/mediawiki/index.php?title=Special%3ANewsChannel&format=rss20&limit=20&cat1=&cat2=&excat1=&wpSubmitNewsChannelParams=Create+feed</rss>-->
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<!-- <div class="compBoxHdr">[[Special:Recentchanges|New &amp; Revised Pages]][[File:RSSIcon16x16.gif|right|link=http://gmod.org/mediawiki/index.php?title=Special:Recentchanges&feed=rss|All recent changes feed]]</div>
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[[{{{pagename}}}]] &bull;
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</div>
  
Thurs, 18 January<br /><br />[http://www.gmod.org/user-interface-caucus  MOD User InterFace Caucus]
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<div class="intro">
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Welcome to the '''Generic Model Organism Database''' project, a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data.<!-- You can use it to create a small laboratory database of genome annotations, or a large web-accessible community database. GMOD tools are in use at [[MOD|many large and small community databases]]. -->
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</div>
  
{| width="50%"
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=== Get Started ===
| width="25%" | 8:30am
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| Welcome, Introductions, GMOD chat
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|-
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| 9:00
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|
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[http://www.gmod.org/face_caucus_sgd_searches_and_retrieval_tools_at_sgd SGD: Dianna Fisk]
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|-
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| 9:25
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| TAIR: Eva Huala
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|-
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| 9:50
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|
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[http://www.gmod.org/face_caucus_sgn_associating_solanaceae_loci_with_phenotype SGN: Robert Buels]
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|-
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| 10:15
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| break
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|-
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| 10:30
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| NCBI: Kim Pruitt
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|-
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| 10:55
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| BioCyc: Peter Karp
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|-
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| 11:20
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|
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[http://www.gmod.org/face_caucus_ucsc_user_interface_issues_challenges_in_a_many_organism_database  UCSC: Kate Rosenbloom]
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|-
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| 11:45
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| Morning wrap-up and general discussion on MOD UIs
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|-
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| 12:00
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| Lunch break
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|-
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| 1:30
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| RGD: Susan Bromberg, George Kowalski
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|-
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| 1:55
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| FlyBase: Josh Goodman &amp; others
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|-
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| 2:20
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| FlyMine/InterMine: Gos Micklem
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|-
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| 2:45
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|
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[http://www.gmod.org/face_caucus_apidb_user_studies_and_impact_on_development ApiDB (GUS): Eileen Kraemer &amp; Steve Fischer]
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|-
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| 3:15
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| break
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|-
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| 3:30
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| ZFIN: Ceri Van Slyke
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|-
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| 3:55
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| Wormbase: Lincoln Stein
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|-
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| 4:20
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| Caucus general discussion on good user interface<br /> practices, new approaches, commonalities
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|-
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| 5:00
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| end session/dinner
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|-
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| 7pm-ish
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| tentative Chado database discussion/tutorial session
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|-
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|}
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Friday, 19 January <br /><br />[http://www.gmod.org/middleware-bake-off Middleware for Chado databases]
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Read the [[Overview|GMOD overview]] for the big picture, or visit [[GMOD Components]] for a comprehensive list of GMOD tools.  If GMOD looks promising for your needs, consider attending the next [[Meetings|GMOD community meeting]].
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=== Get Support ===
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GMOD support is available from several different sources. [[Support]] introduces each support option (this web site, [[GMOD Mailing Lists]], [[Training and Outreach]] activities (including [[GMOD Schools]]), and the [[GMOD Help Desk]]) and offers guidance on which one is the most appropriate for your question.
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=== Get Involved ===
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As an open source project GMOD relies on the [[GMOD Membership|donation of time and software]] by groups and individuals.  Contribution of new tools, adoption of existing ones, and [[Site Guidelines|improving the documentation]] are all welcome. [[MOD|Existing]] and potential users are encouraged to provide feedback via [[GMOD Mailing Lists|mailing lists]] or the [[GMOD Help Desk|help desk]]. <!-- The [[GMOD Project Page]] lists projects in need of ideas and developers.--> You can also attend project [[meetings]].
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=== Popular GMOD Tools ===
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See the [[GMOD Components|full list of GMOD components]]
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<div class="logos">
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[[File:GitcLogo.png|250px|thumb|none|link=Cloud|GMOD in the Cloud toolset]]
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[[File:GBrowseLogo.png|250px|thumb|none|link=GBrowse|GBrowse: Genome annotation viewer]]
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[[File:GalaxyLogoBigger.png|250px|thumb|none|link=Galaxy|Galaxy: Data analysis & integration]]
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[[File:ChadoLogo.png|250px|thumb|none|link=Chado|Chado: Biological database schema]]
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[[File:JBrowseLogo.png|250px|thumb|none|link=JBrowse|JBrowse: Super-fast genome annotation viewer]]
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[[File:Biomart250.png|250px|thumb|none|link=BioMart|BioMart: Data mining system]]
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[[File:WebApolloLogo.png|250px|thumb|none|link=WebApollo|WebApollo: browser-based annotation editor]]
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[[File:MAKERLogo.png|250px|thumb|none|link=MAKER|MAKER: Genome annotation pipeline]]
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[[File:GBrowse_syn_logo.png|250px|thumb|none|link=GBrowse_syn|GBrowse_syn: Synteny viewer]]
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[[File:TripalLogo.png|250px|thumb|none|link=Tripal|Tripal: Chado web interface]]
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[[File:InterMineLogo.png|250px|thumb|none|link=InterMine|InterMine: Data warehousing]]
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[[File:CMapLogo-horiz.png|250px|thumb|none|link=CMap|CMap: Comparative map viewer]]
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[[File:PathwayTools.png|250px|thumb|none|link=Pathway_Tools|Pathway Tools: Metabolic, regulatory pathways]]
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[[File:CantoTextLogo.png|250px|thumb|none|link=Canto|Canto: literature annotation tool]]
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</div>
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<!-- {{Template:Organisations}} -->

Revision as of 14:41, 3 November 2016

Welcome to the Generic Model Organism Database project, a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data.

Get Started

Read the GMOD overview for the big picture, or visit GMOD Components for a comprehensive list of GMOD tools. If GMOD looks promising for your needs, consider attending the next GMOD community meeting.

Get Support

GMOD support is available from several different sources. Support introduces each support option (this web site, GMOD Mailing Lists, Training and Outreach activities (including GMOD Schools), and the GMOD Help Desk) and offers guidance on which one is the most appropriate for your question.

Get Involved

As an open source project GMOD relies on the donation of time and software by groups and individuals. Contribution of new tools, adoption of existing ones, and improving the documentation are all welcome. Existing and potential users are encouraged to provide feedback via mailing lists or the help desk. You can also attend project meetings.


Popular GMOD Tools

See the full list of GMOD components

GMOD in the Cloud toolset
GBrowse: Genome annotation viewer
Galaxy: Data analysis & integration
Chado: Biological database schema
JBrowse: Super-fast genome annotation viewer
BioMart: Data mining system
WebApollo: browser-based annotation editor
MAKER: Genome annotation pipeline
GBrowse_syn: Synteny viewer
Tripal: Chado web interface
InterMine: Data warehousing
CMap: Comparative map viewer
Pathway Tools: Metabolic, regulatory pathways
Canto: literature annotation tool