June 2006 GMOD Meeting
Last updated July 17, 2006.
June 29
8:30 Shuttle from hotel to NESCent
9:00 Introductions - Scott Cain
9:20 About NESCent - Todd Vision, Kathleen Smith
9:30 Project updates - GBrowse, Apollo, PubSearch, SGD etc
10:45 Coffee break
11:00 GMOD Update, including:
- 0.01 release
- Changes to GFF3 data mapping
- New schema elements
- State of integration: Apollo, GBrowse, CMap, BioMart,AmiGO
12:00 Lunch
1:15 SynBrowse--What's new and obtaining/creating data for use.
Xiaokang Pan, Iowa State University
1:45 GMODTools, gff2biomart, and genome grid tools
Don Gilbert, Indiana University
2:15 BioMart
Arek Kasprzyk, EBI
2:45 Coffee
3:00 Pathway Tools
Suzanne Mercer Paley, SRI
3:30 GMOD Architecture Working Group - Finding requirements for a 'toy' application for testing middleware
Scott Cain as a proxy for Eric Just, DictyBase
4:30 GMOD organizational stuff
- Future meetings?
- Coordinated publications?
5:00 Break for dinner
June 30
8:30 Shuttle from hotel to NESCent
9:00 Todd Vision - NESCent, its role in enabling evolutionary model organism databases, and population and phylogenetic visualization
9:15 Terry Casstevens - The Genomic Diversity and Phenotype Data Model
9:40 John Willis - Mimulus as an example of an evolutionary model system
9:55 Owen McMillan - Extension of Chado for Heliconius
10:10 David Kidd - Visualizing phylogeographic patterns
10:30 Coffee
10:45 Jason Stajich - Fungal comparative genomics
11:10 Hilmar Lapp - An evolutionary ontology proposal
11:35 Discussion of planned projects and grant applications and how to avoid duplication and encourage cooperation
12:00 Lunch
1:15 (Presentations, show and tell, depends on what suggestions I get).
The meeting will probably officially break around 5pm, but I am realistic enough to know that people will start leaving after lunch.
GMODTools, gff2biomart, and genome grid tools slide show is here
http://eugenes.org/gmod/meetings/gmod-06jun/gmodj06-genomegrid-dgg.pdf,
and PPT
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